Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 AL031667.3-201ENST00000620124 655 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 PLCE1P1-201ENST00000622094 305 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC008443.7-201ENST00000622195 246 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AP000770.2-201ENST00000623694 100 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC244258.1-201ENST00000637553 1071 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC119674.1-207ENST00000641355 633 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS28Q9UK41 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS28Q9UK41 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS28Q9UK41 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS28Q9UK41 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS28Q9UK41 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS28Q9UK41 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS28Q9UK41 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS28Q9UK41 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS28Q9UK41 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS28Q9UK41 RNU6-76P-201ENST00000384060 104 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 U3.42-201ENST00000408746 214 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 TPMTP3-201ENST00000411928 735 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AC069157.1-201ENST00000421749 137 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 RPS29P31-201ENST00000446147 164 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 U3.44-201ENST00000458938 192 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AC092754.2-201ENST00000463506 460 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 LINC00888-204ENST00000487386 421 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS28Q9UK41 AC026784.1-201ENST00000507986 352 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AL359273.1-201ENST00000510918 627 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 Y_RNA.717-201ENST00000517106 92 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 ERHP1-201ENST00000523006 310 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 DUXAP6-201ENST00000553858 601 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 BNIP3P23-201ENST00000599655 511 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AC018714.1-201ENST00000605028 208 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AC097468.3-201ENST00000607956 456 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 RNVU1-4-201ENST00000612985 164 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AL391261.4-201ENST00000616012 481 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 XIST_intron.1-201ENST00000619444 68 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AC009268.2-201ENST00000621925 457 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AP002791.1-201ENST00000623291 381 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AC243312.2-201ENST00000623340 601 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 MIR4275-201ENST00000636486 87 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 OR8B1P-202ENST00000641132 1178 ntBASIC3.75□□□□□ -1.81
VPS28Q9UK41 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS28Q9UK41 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS28Q9UK41 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS28Q9UK41 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS28Q9UK41 RPL7P26-201ENST00000333817 754 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 RNU6-637P-201ENST00000384050 107 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 MIR493-201ENST00000385254 89 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 MIR1290-201ENST00000408735 78 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 RN7SKP53-201ENST00000411337 315 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC109780.2-201ENST00000413467 845 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 AL159169.1-201ENST00000421119 127 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC099563.1-201ENST00000456086 418 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC109464.2-201ENST00000510242 943 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 RNU6-678P-201ENST00000516832 109 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 IGKV2-23-201ENST00000518729 323 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC008489.1-201ENST00000524271 483 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC023161.2-201ENST00000551218 780 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 VN1R90P-201ENST00000595717 726 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 AL109653.1-201ENST00000603091 248 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 SNORA51-201ENST00000606420 132 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 AC004067.1-201ENST00000608733 700 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 AL392048.1-201ENST00000613946 534 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 AL159972.1-201ENST00000625150 448 ntBASIC3.74□□□□□ -1.81
VPS28Q9UK41 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
VPS28Q9UK41 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms