Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 RNU6-552P-201ENST00000362869 119 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 RNU4-20P-201ENST00000365601 151 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 RNU6-641P-201ENST00000384006 107 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 RNU6-38P-201ENST00000384085 107 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 RNU6-1013P-201ENST00000384180 107 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 RNU6-831P-201ENST00000384548 107 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 RNA5SP171-201ENST00000391071 115 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 RNU6-903P-201ENST00000391270 109 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 SDHCP2-201ENST00000398565 501 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 MTCO2P27-201ENST00000420740 428 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 RPL23AP93-201ENST00000440847 484 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 RNU6-333P-201ENST00000459117 107 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AC105137.1-201ENST00000484355 562 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AL049874.2-201ENST00000492636 288 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 FAM206BP-201ENST00000510179 541 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AC105031.1-201ENST00000518550 476 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 HMGB1P41-201ENST00000520234 440 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AP005597.4-201ENST00000526762 229 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AP005435.4-201ENST00000529514 284 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AC006349.1-201ENST00000555526 235 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AC006130.2-201ENST00000586202 326 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AL022099.1-201ENST00000604551 712 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AL360085.1-201ENST00000604713 532 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AC090971.5-201ENST00000621102 293 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AC015908.5-201ENST00000623289 343 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 AP004289.2-201ENST00000444413 1457 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 STX3-208ENST00000641815 3236 ntBASIC5.87□□□□□ -1.47
CCDC87Q9NVE4 ZNF734P-201ENST00000419494 1534 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 Y_RNA.128-201ENST00000363391 112 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 SNORD51-201ENST00000384320 80 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 Y_RNA.530-201ENST00000384587 101 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 U3.29-201ENST00000391296 212 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AL359643.1-201ENST00000404109 423 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 RPL23AP38-201ENST00000423801 469 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 RPL35AP22-201ENST00000436855 335 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 RPL12P18-201ENST00000437175 325 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AC016696.1-201ENST00000446949 318 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 RPS29P15-201ENST00000458329 171 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 snoU13.22-201ENST00000459428 104 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AC079804.1-201ENST00000461922 436 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 UQCRHP4-201ENST00000471686 272 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 RN7SKP82-201ENST00000516786 223 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 RNA5SP503-201ENST00000517047 117 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AL359219.2-201ENST00000555184 348 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AC006363.1-201ENST00000603806 463 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AL031666.3-201ENST00000609320 1006 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AP001486.3-201ENST00000615334 372 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AC040168.1-201ENST00000623594 991 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AP001029.2-203ENST00000589795 4910 ntBASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC87Q9NVE4 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AL022311.1-201ENST00000623726 19416 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 MTND4P14-201ENST00000435799 1354 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 SNORA62.1-201ENST00000364287 154 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 RNU6-1078P-201ENST00000364522 103 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 Y_RNA.422-201ENST00000384054 114 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 RNU1-13P-201ENST00000384499 162 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 ENSAP1-201ENST00000392855 326 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 RPL23AP26-201ENST00000412728 464 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 SAGE2P-201ENST00000420011 2126 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 BRK1P2-201ENST00000442875 223 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 RN7SL98P-201ENST00000462271 300 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 TTC39CP1-201ENST00000512513 755 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 RN7SKP13-201ENST00000515933 244 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms