Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AL445433.1-201ENST00000457507 257 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 FCF1P3-201ENST00000496394 590 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 RN7SKP46-201ENST00000515942 234 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AC090572.1-201ENST00000519251 160 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AP003072.2-201ENST00000527756 676 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AL133271.1-201ENST00000538229 291 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 SLC25A36P1-201ENST00000590111 465 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 LLPHP1-201ENST00000603571 367 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 RNU4-89P-201ENST00000607443 133 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 U73479.1-201ENST00000618062 168 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AC099654.14-201ENST00000638599 341 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.4□□□□□ -1.7
TDP1Q9NUW8 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
TDP1Q9NUW8 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
TDP1Q9NUW8 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
TDP1Q9NUW8 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
TDP1Q9NUW8 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
TDP1Q9NUW8 RNA5SP130-201ENST00000364431 114 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 RNU6-534P-201ENST00000364877 106 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 RNU1-39P-201ENST00000383897 165 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 Y_RNA.573-201ENST00000384763 105 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 RPL32P23-201ENST00000397237 405 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AL603766.1-201ENST00000407763 664 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 HMGN1P24-201ENST00000412282 298 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 VDAC1P9-201ENST00000412766 841 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 JKAMPP1-201ENST00000413804 919 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 OR1AA1P-201ENST00000419597 916 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC137499.1-201ENST00000427602 88 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 OR4K11P-201ENST00000431829 904 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 NEK4P1-201ENST00000433383 879 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC093156.1-201ENST00000440382 670 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 RAD23BP3-201ENST00000454157 1152 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC108059.3-201ENST00000456388 214 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 RPL23AP65-201ENST00000475608 468 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC074344.1-201ENST00000512823 224 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 MTND1P35-201ENST00000526739 508 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC074050.1-201ENST00000563247 211 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AL031176.1-201ENST00000604554 466 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC004908.2-201ENST00000609090 574 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC009161.2-201ENST00000624626 138 ntBASIC4.4□□□□□ -1.71
TDP1Q9NUW8 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
TDP1Q9NUW8 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AC090229.1-201ENST00000590983 1609 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 CR848007.1-201ENST00000442354 1699 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 Y_RNA.89-201ENST00000363031 102 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 RNU5E-4P-201ENST00000364931 120 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 RNU6-108P-201ENST00000365558 107 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 SNORD96B-201ENST00000386148 79 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 MIR1911-201ENST00000410783 80 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AMD1P2-201ENST00000412936 992 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 RPL23AP30-201ENST00000432419 501 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 GPR143P-201ENST00000434155 205 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 RPL23AP46-201ENST00000438548 490 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AL162151.2-201ENST00000448875 158 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AC010655.1-201ENST00000449336 292 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AP000857.1-201ENST00000532151 543 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AC006064.5-201ENST00000541782 248 ntBASIC4.39□□□□□ -1.71
TDP1Q9NUW8 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.39□□□□□ -1.71
TDP1Q9NUW8 DYNLL1P4-201ENST00000549314 266 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms