Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 HIGD1AP3-201ENST00000515857 278 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 RN7SKP234-201ENST00000517173 224 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 FTH1P11-201ENST00000517577 551 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 AP000676.2-201ENST00000529711 301 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 AP002404.1-201ENST00000532005 451 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 AC040958.1-201ENST00000561102 201 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 AC067852.4-201ENST00000590314 478 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 AL669831.4-202ENST00000590817 238 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 AL162431.4-201ENST00000604674 411 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 PLCE1P1-201ENST00000622094 305 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 MTCO1P24-201ENST00000515438 1558 ntBASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TRIM56Q9BRZ2 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 AC026951.1-201ENST00000559530 2459 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 RNU1-19P-201ENST00000363306 165 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 Y_RNA.176-201ENST00000363815 109 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 Y_RNA.188-201ENST00000363952 111 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 MIR105-2-201ENST00000385083 81 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 RNU11-4P-201ENST00000391149 133 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 RNU6-847P-201ENST00000411115 108 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 CTSL3P-202ENST00000412179 788 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 RPL12P18-201ENST00000437175 325 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 H2AFZP6-201ENST00000444403 394 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 MRPL48P1-201ENST00000445390 636 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 AC008526.1-201ENST00000509149 338 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 RNU6-1016P-201ENST00000516689 94 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 GSTP1P1-201ENST00000548078 319 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 MTCO3P23-201ENST00000561363 289 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 RPL10P14-201ENST00000565265 298 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 MIR4472-2-201ENST00000582069 67 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 IMMP1LP3-201ENST00000604197 224 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 SNHG22-203ENST00000617833 660 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 MIR4275-201ENST00000636486 87 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 ZNF519P1-201ENST00000449011 1626 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 DDX10P1-201ENST00000448545 1933 ntBASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TRIM56Q9BRZ2 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 KPNA2P1-201ENST00000458289 1591 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 Y_RNA.47-201ENST00000362697 108 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 SNORD3E-201ENST00000362899 217 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 Y_RNA.364-201ENST00000365532 101 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 SNORA75B-201ENST00000384053 137 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 Y_RNA.557-201ENST00000384680 107 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 MT-TR-201ENST00000387439 65 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 RNU6-550P-201ENST00000391057 101 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 RNU2-47P-201ENST00000410649 186 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 Y_RNA.646-201ENST00000410980 101 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 COX5BP7-201ENST00000414780 274 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 AC114491.1-201ENST00000416095 246 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 AL355433.1-201ENST00000422804 300 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 AC016712.1-201ENST00000431088 378 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 AL160004.2-201ENST00000432935 350 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 AL162388.1-201ENST00000450912 352 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 CECR9-201ENST00000453421 199 ntBASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.31□□□□□ -1.56
TRIM56Q9BRZ2 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms