Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 RANP9-201ENST00000519957 271 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AMZ2P1-203ENST00000565833 850 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 ZNF415P1-201ENST00000582279 1166 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 MAGOH2P-202ENST00000584384 429 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 DNAJC19P3-201ENST00000594491 331 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC105148.1-201ENST00000604961 409 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC099785.1-201ENST00000605697 437 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 RNU1-30P-201ENST00000606575 163 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC069209.1-201ENST00000619282 651 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC022306.3-201ENST00000619930 550 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC243312.2-201ENST00000623340 601 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 MTCO1P9-201ENST00000505577 1534 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC032011.1-201ENST00000611703 1549 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC026241.1-201ENST00000517873 2142 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC022336.2-201ENST00000568966 2538 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 RNA5SP50-201ENST00000363731 107 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 RNA5SP492-201ENST00000411330 114 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AL592310.1-201ENST00000414330 671 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AL513477.1-202ENST00000417061 214 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 MTND4P6-201ENST00000438297 472 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 SDCBPP1-201ENST00000440192 890 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 UBBP3-201ENST00000445497 241 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 RPL21P23-201ENST00000446654 460 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 PRDX3P3-201ENST00000447765 522 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 HMGN1P5-201ENST00000448591 263 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 RN7SL293P-201ENST00000481765 281 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC010374.2-201ENST00000512933 535 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 RNU6-1282P-201ENST00000516735 96 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 RNA5SP380-201ENST00000517190 98 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 MTCO1P47-201ENST00000523889 1271 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 NDUFS5P6-201ENST00000529136 295 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 DEFB130C-202ENST00000530001 230 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 OR5B10P-201ENST00000532869 642 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC128657.1-201ENST00000549459 145 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC087897.1-201ENST00000550134 156 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AL157394.1-201ENST00000562983 1224 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC006116.10-201ENST00000591836 581 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC008739.2-201ENST00000597006 317 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC091057.2-201ENST00000602594 792 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 BNIP3P31-201ENST00000604515 566 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AL136363.1-201ENST00000605349 337 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC069545.1-201ENST00000605671 358 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AP002802.2-201ENST00000605877 235 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AL139022.2-201ENST00000606934 443 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC131902.3-201ENST00000611767 581 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC073308.1-201ENST00000623696 305 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC120349.2-201ENST00000625002 298 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AP003485.1-201ENST00000625093 753 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AL049781.1-201ENST00000623195 3585 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC012321.1-201ENST00000561622 1588 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 MFSD8-233ENST00000641482 4860 ntBASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
ZNF540Q8NDQ6 AC073346.2-201ENST00000624724 2058 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 RNA5SP51-201ENST00000364750 119 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 RNU6-76P-201ENST00000384060 104 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 MIR183-201ENST00000384958 110 ntBASIC3.1□□□□□ -1.91
ZNF540Q8NDQ6 RPL7P60-201ENST00000397636 735 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms