| HES3 | Q5TGS1 | DEFB122-202 | ENST00000569013 | 197 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC011518.1-202 | ENST00000592668 | 407 nt | TSL 5 BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | RNASEH2B-AS1-206 | ENST00000601286 | 657 nt | TSL 5 BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | BNIP3P4-201 | ENST00000604946 | 565 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | LINC02098-202 | ENST00000609260 | 554 nt | TSL 3 BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | C3orf85-208 | ENST00000622536 | 925 nt | APPRIS P5 TSL 5 BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | SATB1-AS1-269 | ENST00000630766 | 591 nt | TSL 5 BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | HTR2B-201 | ENST00000258400 | 2246 nt | APPRIS P1 TSL 1 (best) BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC093831.2-201 | ENST00000624393 | 3427 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | OR51A4-202 | ENST00000641898 | 4393 nt | APPRIS P1 BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC109315.1-201 | ENST00000584143 | 1347 nt | BASIC | 2.42 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC080100.1-201 | ENST00000624239 | 5356 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | SEPT7-205 | ENST00000432293 | 1362 nt | TSL 1 (best) BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | RNA5SP258-201 | ENST00000362750 | 119 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | MIR1289-2-201 | ENST00000408360 | 111 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | RNU6-1077P-201 | ENST00000410506 | 102 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | RNU4-78P-201 | ENST00000410940 | 126 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | RAP1BP1-201 | ENST00000412709 | 553 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | USP9YP20-201 | ENST00000419224 | 558 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | DPH3P2-201 | ENST00000422618 | 250 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | UBE2D3P2-201 | ENST00000424409 | 445 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | MTND4LP7-201 | ENST00000431728 | 294 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AL390879.2-204 | ENST00000438602 | 582 nt | TSL 3 BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | RPL36AP33-201 | ENST00000450395 | 310 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | TBL1XR1-AS1-201 | ENST00000454723 | 414 nt | TSL 5 BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AL021393.1-201 | ENST00000456740 | 539 nt | TSL 5 BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC121764.2-201 | ENST00000469806 | 587 nt | TSL 2 BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AP004217.1-201 | ENST00000480579 | 346 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC108210.2-201 | ENST00000503681 | 201 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC234781.5-201 | ENST00000508429 | 271 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | RNU6-56P-201 | ENST00000516986 | 93 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC084706.1-201 | ENST00000521879 | 558 nt | TSL 2 BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC007536.1-201 | ENST00000533382 | 349 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | SETP2-201 | ENST00000553886 | 926 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | SNORD84-203 | ENST00000584275 | 78 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AP004247.3-201 | ENST00000608682 | 624 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC090116.1-201 | ENST00000615679 | 446 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AC068831.7-201 | ENST00000616954 | 363 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AL360181.4-201 | ENST00000621752 | 134 nt | BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | ATXN3L-202 | ENST00000622204 | 837 nt | TSL 5 BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | PP2D1-202 | ENST00000389050 | 2151 nt | APPRIS P1 TSL 5 BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | UHMK1-204 | ENST00000545294 | 8117 nt | TSL 2 BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | AGTR1-206 | ENST00000474935 | 1795 nt | APPRIS P1 TSL 3 BASIC | 2.41 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | SIRT1-202 | ENST00000403579 | 3333 nt | TSL 1 (best) BASIC | 2.4 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | ISPD-AS1-202 | ENST00000438573 | 2252 nt | TSL 1 (best) BASIC | 2.4 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | PCM1-222 | ENST00000524226 | 5955 nt | TSL 1 (best) BASIC | 2.4 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | FGF14-201 | ENST00000376131 | 12882 nt | TSL 1 (best) BASIC | 2.4 | □□□□□ -2.02 | | |
| HES3 | Q5TGS1 | OR8K1-201 | ENST00000279783 | 1087 nt | APPRIS P1 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | C11orf40-201 | ENST00000307616 | 654 nt | APPRIS P1 TSL 1 (best) BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | SNORA51.4-201 | ENST00000364993 | 124 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | PTPRC-202 | ENST00000367364 | 1017 nt | TSL 1 (best) BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RNU1-73P-201 | ENST00000383971 | 164 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | MIR649-201 | ENST00000384843 | 97 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | MIR764-201 | ENST00000390811 | 85 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RNU6-821P-201 | ENST00000390995 | 107 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RNU6ATAC40P-201 | ENST00000408580 | 137 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | SUMO1-205 | ENST00000409205 | 534 nt | TSL 2 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AL117337.1-201 | ENST00000412789 | 444 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC109780.2-201 | ENST00000413467 | 845 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AL158825.1-201 | ENST00000414735 | 521 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AL591806.2-201 | ENST00000433122 | 173 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AL138900.2-201 | ENST00000434098 | 156 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AL354977.1-201 | ENST00000438147 | 679 nt | TSL 5 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RABEPKP1-201 | ENST00000440529 | 1026 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC007557.1-201 | ENST00000451711 | 541 nt | TSL 2 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AL445488.1-201 | ENST00000457272 | 706 nt | TSL 5 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RPL23AP45-201 | ENST00000476406 | 468 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC104211.1-202 | ENST00000521307 | 866 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | OR6C68-201 | ENST00000548615 | 939 nt | APPRIS P1 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC011773.2-201 | ENST00000551479 | 285 nt | TSL 5 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AL035071.2-201 | ENST00000565572 | 459 nt | TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RPL23AP84-201 | ENST00000571193 | 464 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC083760.1-201 | ENST00000589621 | 670 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC025588.3-201 | ENST00000604182 | 274 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC025754.2-201 | ENST00000606491 | 432 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | IL33-205 | ENST00000611532 | 757 nt | TSL 1 (best) BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC008162.2-201 | ENST00000613352 | 291 nt | APPRIS P1 TSL 3 BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AL163051.2-201 | ENST00000618976 | 735 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AP006437.1-201 | ENST00000641440 | 3685 nt | BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | PRKD3-201 | ENST00000234179 | 5900 nt | APPRIS P1 TSL 1 (best) BASIC | 2.4 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | CENPE-201 | ENST00000265148 | 8612 nt | APPRIS P1 TSL 2 BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | CCDC66-201 | ENST00000326595 | 3027 nt | APPRIS P3 TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | YWHAZ-219 | ENST00000522542 | 1394 nt | TSL 2 BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AL050331.3-201 | ENST00000448740 | 2081 nt | TSL 2 BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC244517.1-201 | ENST00000606030 | 2086 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RNU6-1249P-201 | ENST00000363237 | 111 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | U8.9-201 | ENST00000365667 | 134 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | DEFB125-201 | ENST00000382410 | 587 nt | APPRIS P1 TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RNU6-921P-201 | ENST00000384361 | 107 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RNU6-796P-201 | ENST00000391086 | 107 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RNU1-101P-201 | ENST00000391171 | 127 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RNU4-26P-201 | ENST00000410270 | 107 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | RNA5SP344-201 | ENST00000411081 | 104 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC007064.1-201 | ENST00000412238 | 351 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AL078590.2-202 | ENST00000422736 | 568 nt | TSL 3 BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC104332.2-201 | ENST00000429959 | 156 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC244505.4-201 | ENST00000434905 | 287 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC010157.1-201 | ENST00000440589 | 527 nt | TSL 4 BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | AC002542.1-201 | ENST00000440683 | 193 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| HES3 | Q5TGS1 | SSXP5-201 | ENST00000443473 | 287 nt | BASIC | 2.39 | □□□□□ -2.03 | | |