Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RPS29P2-201ENST00000479278 136 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 RPS29P19-201ENST00000479709 171 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 RN7SL691P-201ENST00000494487 301 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC074250.1-201ENST00000511117 192 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 MTND4LP18-201ENST00000526864 291 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AL606490.9-201ENST00000603331 271 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC004853.1-201ENST00000604902 698 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC239868.4-201ENST00000608318 671 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AL590099.1-201ENST00000615276 138 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC027807.2-201ENST00000616099 408 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 Z69908.1-201ENST00000622603 247 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AL445363.3-201ENST00000623080 671 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AL773545.4-201ENST00000637262 310 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC006927.3-201ENST00000638789 384 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AL513478.4-201ENST00000641636 310 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AC024560.2-201ENST00000507981 1497 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 AF117829.1-206ENST00000621883 3802 ntBASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PDLIM3Q53GG5 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 RNU5F-6P-201ENST00000362979 116 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 RNU6-97P-201ENST00000363387 104 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 Y_RNA.234-201ENST00000364409 97 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 SNORD51-201ENST00000384320 80 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 RNU11-4P-201ENST00000391149 133 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AL583835.1-201ENST00000399570 407 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 RNU4-65P-201ENST00000410473 140 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 RN7SKP235-201ENST00000410662 305 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC096664.2-201ENST00000411843 406 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 PGBD4P8-201ENST00000412993 562 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 RPS7P15-201ENST00000415804 584 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC108032.1-201ENST00000416706 207 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC129850.1-201ENST00000436203 508 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 MTCO2P16-201ENST00000436962 677 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 KATNBL1P3-201ENST00000443475 909 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 COX6CP12-201ENST00000446748 202 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 U3.44-201ENST00000458938 192 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 HMGB1P25-201ENST00000468402 607 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 ST13P14-201ENST00000474095 734 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC104563.1-201ENST00000476147 376 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 RPL35P6-201ENST00000490024 372 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 RNU1-61P-201ENST00000516107 151 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC025881.1-201ENST00000518851 512 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC026403.1-201ENST00000518938 295 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 TRAV8-5-201ENST00000537369 341 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 ACTR3BP3-201ENST00000565577 979 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AP005136.1-201ENST00000579765 429 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AL022161.1-201ENST00000604390 213 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC055876.5-201ENST00000605667 259 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AC092354.1-201ENST00000606057 376 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 MIR7844-201ENST00000616161 122 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 MIR6852-201ENST00000621699 66 ntBASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.32□□□□□ -1.88
PDLIM3Q53GG5 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms