Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.15□□□□□ -1.75
CTCFP49711 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CTCFP49711 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.15□□□□□ -1.75
CTCFP49711 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.15□□□□□ -1.75
CTCFP49711 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.15□□□□□ -1.75
CTCFP49711 AC106791.2-201ENST00000604680 391 ntBASIC4.15□□□□□ -1.75
CTCFP49711 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC4.15□□□□□ -1.75
CTCFP49711 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC4.15□□□□□ -1.75
CTCFP49711 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CTCFP49711 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CTCFP49711 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CTCFP49711 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CTCFP49711 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.15□□□□□ -1.75
CTCFP49711 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CTCFP49711 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC4.14□□□□□ -1.75
CTCFP49711 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CTCFP49711 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CTCFP49711 OR5H2-201ENST00000355273 945 ntBASIC4.14□□□□□ -1.75
CTCFP49711 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CTCFP49711 RNU6-335P-201ENST00000364563 113 ntBASIC4.14□□□□□ -1.75
CTCFP49711 CD2-201ENST00000369477 478 ntTSL 2 BASIC4.14□□□□□ -1.75
CTCFP49711 U3.29-201ENST00000391296 212 ntBASIC4.14□□□□□ -1.75
CTCFP49711 AL590084.2-201ENST00000401481 382 ntBASIC4.14□□□□□ -1.75
CTCFP49711 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.14□□□□□ -1.75
CTCFP49711 AL593851.1-201ENST00000426171 157 ntBASIC4.14□□□□□ -1.75
CTCFP49711 RPL21P112-201ENST00000434403 463 ntBASIC4.14□□□□□ -1.75
CTCFP49711 AC096638.2-201ENST00000434965 711 ntBASIC4.14□□□□□ -1.75
CTCFP49711 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.14□□□□□ -1.75
CTCFP49711 UBE2D3P1-201ENST00000436669 444 ntBASIC4.14□□□□□ -1.75
CTCFP49711 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.14□□□□□ -1.75
CTCFP49711 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
CTCFP49711 Z75741.1-201ENST00000446793 314 ntBASIC4.14□□□□□ -1.75
CTCFP49711 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4.14□□□□□ -1.75
CTCFP49711 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.14□□□□□ -1.75
CTCFP49711 AC110794.1-201ENST00000505816 425 ntBASIC4.14□□□□□ -1.75
CTCFP49711 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.14□□□□□ -1.75
CTCFP49711 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC4.14□□□□□ -1.75
CTCFP49711 MTND2P38-201ENST00000522536 667 ntBASIC4.14□□□□□ -1.75
CTCFP49711 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.14□□□□□ -1.75
CTCFP49711 AP003385.6-201ENST00000531603 374 ntBASIC4.14□□□□□ -1.75
CTCFP49711 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.14□□□□□ -1.75
CTCFP49711 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC4.14□□□□□ -1.75
CTCFP49711 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC4.14□□□□□ -1.75
CTCFP49711 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.14□□□□□ -1.75
CTCFP49711 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.14□□□□□ -1.75
CTCFP49711 ISCA1P3-201ENST00000577104 373 ntBASIC4.14□□□□□ -1.75
CTCFP49711 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.14□□□□□ -1.75
CTCFP49711 AL669831.4-202ENST00000590817 238 ntBASIC4.14□□□□□ -1.75
CTCFP49711 AC006539.2-201ENST00000601729 572 ntBASIC4.14□□□□□ -1.75
CTCFP49711 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.14□□□□□ -1.75
CTCFP49711 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.14□□□□□ -1.75
CTCFP49711 IGHVIII-44-202ENST00000636235 289 ntBASIC4.14□□□□□ -1.75
CTCFP49711 AC103706.2-201ENST00000638080 240 ntBASIC4.14□□□□□ -1.75
CTCFP49711 AP000553.6-201ENST00000641242 118 ntBASIC4.14□□□□□ -1.75
CTCFP49711 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CTCFP49711 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
CTCFP49711 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CTCFP49711 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CTCFP49711 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CTCFP49711 AF127577.6-201ENST00000623352 2191 ntBASIC4.13□□□□□ -1.75
CTCFP49711 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.13□□□□□ -1.75
CTCFP49711 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CTCFP49711 AC012065.2-201ENST00000421295 375 ntBASIC4.13□□□□□ -1.75
CTCFP49711 AC006548.1-201ENST00000427470 102 ntBASIC4.13□□□□□ -1.75
CTCFP49711 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.13□□□□□ -1.75
CTCFP49711 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.13□□□□□ -1.75
CTCFP49711 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4.13□□□□□ -1.75
CTCFP49711 NPM1P49-201ENST00000448027 714 ntBASIC4.13□□□□□ -1.75
CTCFP49711 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.13□□□□□ -1.75
CTCFP49711 RNU7-136P-201ENST00000458819 69 ntBASIC4.13□□□□□ -1.75
CTCFP49711 RN7SL432P-201ENST00000484057 298 ntBASIC4.13□□□□□ -1.75
CTCFP49711 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.13□□□□□ -1.75
CTCFP49711 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.13□□□□□ -1.75
CTCFP49711 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.13□□□□□ -1.75
CTCFP49711 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CTCFP49711 AC107954.1-201ENST00000565906 727 ntBASIC4.13□□□□□ -1.75
CTCFP49711 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC4.13□□□□□ -1.75
CTCFP49711 SNRPGP15-201ENST00000600149 222 ntBASIC4.13□□□□□ -1.75
CTCFP49711 CKS1BP3-201ENST00000600888 237 ntBASIC4.13□□□□□ -1.75
CTCFP49711 AL596327.1-201ENST00000603629 213 ntBASIC4.13□□□□□ -1.75
CTCFP49711 AL133507.1-201ENST00000605269 557 ntBASIC4.13□□□□□ -1.75
CTCFP49711 HMGN2P28-201ENST00000606102 262 ntBASIC4.13□□□□□ -1.75
CTCFP49711 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.13□□□□□ -1.75
CTCFP49711 AC012531.5-201ENST00000611375 151 ntBASIC4.13□□□□□ -1.75
CTCFP49711 AP000676.3-201ENST00000623299 569 ntBASIC4.13□□□□□ -1.75
CTCFP49711 CR381572.1-201ENST00000625098 102 ntBASIC4.13□□□□□ -1.75
CTCFP49711 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC4.13□□□□□ -1.75
CTCFP49711 MTND2P41-201ENST00000637599 773 ntBASIC4.13□□□□□ -1.75
CTCFP49711 DDX43P2-201ENST00000604753 1354 ntBASIC4.13□□□□□ -1.75
CTCFP49711 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.13□□□□□ -1.75
CTCFP49711 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CTCFP49711 NCAPGP1-201ENST00000505112 1814 ntBASIC4.12□□□□□ -1.75
CTCFP49711 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CTCFP49711 RNU6-263P-201ENST00000363811 107 ntBASIC4.12□□□□□ -1.75
CTCFP49711 SNORA51.2-201ENST00000364595 132 ntBASIC4.12□□□□□ -1.75
CTCFP49711 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CTCFP49711 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CTCFP49711 CYCSP45-201ENST00000402289 315 ntBASIC4.12□□□□□ -1.75
CTCFP49711 HSPE1P26-201ENST00000405341 275 ntBASIC4.12□□□□□ -1.75
CTCFP49711 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms