Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-1226P-201ENST00000384317 107 ntBASIC4.41□□□□□ -1.7
MSX2P35548 RNU6-1160P-201ENST00000384546 104 ntBASIC4.41□□□□□ -1.7
MSX2P35548 MIR559-201ENST00000385188 96 ntBASIC4.41□□□□□ -1.7
MSX2P35548 U3.20-201ENST00000390909 217 ntBASIC4.41□□□□□ -1.7
MSX2P35548 VN1R36P-201ENST00000414936 291 ntBASIC4.41□□□□□ -1.7
MSX2P35548 CHEK2P3-201ENST00000416118 248 ntBASIC4.41□□□□□ -1.7
MSX2P35548 AL451054.2-201ENST00000420896 202 ntBASIC4.41□□□□□ -1.7
MSX2P35548 HSPE1P1-201ENST00000421494 318 ntBASIC4.41□□□□□ -1.7
MSX2P35548 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSX2P35548 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.41□□□□□ -1.7
MSX2P35548 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.41□□□□□ -1.7
MSX2P35548 PPP1R2P5-201ENST00000457256 603 ntBASIC4.41□□□□□ -1.7
MSX2P35548 PLGLA-201ENST00000465668 449 ntBASIC4.41□□□□□ -1.7
MSX2P35548 RPL7P42-201ENST00000481005 679 ntBASIC4.41□□□□□ -1.7
MSX2P35548 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.41□□□□□ -1.7
MSX2P35548 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.41□□□□□ -1.7
MSX2P35548 KLHL2P1-201ENST00000508691 521 ntBASIC4.41□□□□□ -1.7
MSX2P35548 BTF3P13-201ENST00000513224 490 ntBASIC4.41□□□□□ -1.7
MSX2P35548 AC105417.1-201ENST00000514691 285 ntBASIC4.41□□□□□ -1.7
MSX2P35548 AC093853.1-201ENST00000515689 483 ntBASIC4.41□□□□□ -1.7
MSX2P35548 RNA5SP92-201ENST00000516437 110 ntBASIC4.41□□□□□ -1.7
MSX2P35548 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.41□□□□□ -1.7
MSX2P35548 MTND6P33-201ENST00000571794 183 ntBASIC4.41□□□□□ -1.7
MSX2P35548 MIR4458-201ENST00000578872 75 ntBASIC4.41□□□□□ -1.7
MSX2P35548 MIR5699-201ENST00000578903 90 ntBASIC4.41□□□□□ -1.7
MSX2P35548 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.41□□□□□ -1.7
MSX2P35548 AC060771.1-201ENST00000582031 164 ntBASIC4.41□□□□□ -1.7
MSX2P35548 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.41□□□□□ -1.7
MSX2P35548 AC079684.1-201ENST00000621405 437 ntBASIC4.41□□□□□ -1.7
MSX2P35548 AL159972.1-201ENST00000625150 448 ntBASIC4.41□□□□□ -1.7
MSX2P35548 MIR6715B-201ENST00000637172 77 ntBASIC4.41□□□□□ -1.7
MSX2P35548 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.41□□□□□ -1.7
MSX2P35548 AC099654.2-201ENST00000433031 1980 ntBASIC4.41□□□□□ -1.7
MSX2P35548 AC011460.1-201ENST00000636268 1834 ntBASIC4.41□□□□□ -1.7
MSX2P35548 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.41□□□□□ -1.7
MSX2P35548 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.41□□□□□ -1.7
MSX2P35548 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSX2P35548 AC004972.1-201ENST00000623934 2209 ntBASIC4.41□□□□□ -1.7
MSX2P35548 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
MSX2P35548 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
MSX2P35548 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
MSX2P35548 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.7
MSX2P35548 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.4□□□□□ -1.7
MSX2P35548 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.4□□□□□ -1.7
MSX2P35548 AC009902.3-201ENST00000606235 2172 ntBASIC4.4□□□□□ -1.7
MSX2P35548 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.4□□□□□ -1.7
MSX2P35548 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.4□□□□□ -1.7
MSX2P35548 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
MSX2P35548 OR1S2-201ENST00000302592 978 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC067945.1-201ENST00000342609 618 ntBASIC4.4□□□□□ -1.71
MSX2P35548 RNA5SP52-201ENST00000362448 134 ntBASIC4.4□□□□□ -1.71
MSX2P35548 RNA5SP258-201ENST00000362750 119 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.4□□□□□ -1.71
MSX2P35548 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
MSX2P35548 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.4□□□□□ -1.71
MSX2P35548 OR4K11P-201ENST00000431829 904 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC093156.1-201ENST00000440382 670 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC006480.1-201ENST00000449887 378 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC4.4□□□□□ -1.71
MSX2P35548 AC079168.2-201ENST00000453977 416 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.4□□□□□ -1.71
MSX2P35548 AP001992.1-205ENST00000462248 379 ntBASIC4.4□□□□□ -1.71
MSX2P35548 RPL5P30-201ENST00000465511 891 ntBASIC4.4□□□□□ -1.71
MSX2P35548 RN7SL30P-201ENST00000488416 306 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.4□□□□□ -1.71
MSX2P35548 AC108022.1-201ENST00000493466 478 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC093767.1-201ENST00000504523 156 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC091868.1-201ENST00000508746 304 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC004062.1-201ENST00000509926 645 ntBASIC4.4□□□□□ -1.71
MSX2P35548 FAM206BP-201ENST00000510179 541 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC104057.1-201ENST00000515547 497 ntBASIC4.4□□□□□ -1.71
MSX2P35548 RNU6-1170P-201ENST00000515974 106 ntBASIC4.4□□□□□ -1.71
MSX2P35548 RN7SKP277-201ENST00000516895 283 ntBASIC4.4□□□□□ -1.71
MSX2P35548 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.4□□□□□ -1.71
MSX2P35548 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.4□□□□□ -1.71
MSX2P35548 OR4P1P-201ENST00000530808 1136 ntBASIC4.4□□□□□ -1.71
MSX2P35548 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.4□□□□□ -1.71
MSX2P35548 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.4□□□□□ -1.71
MSX2P35548 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC4.4□□□□□ -1.71
MSX2P35548 AC133555.2-201ENST00000550213 292 ntBASIC4.4□□□□□ -1.71
MSX2P35548 RN7SL802P-201ENST00000577858 299 ntBASIC4.4□□□□□ -1.71
MSX2P35548 OR4K8P-201ENST00000578842 1048 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.4□□□□□ -1.71
MSX2P35548 AC022726.1-201ENST00000587475 207 ntBASIC4.4□□□□□ -1.71
MSX2P35548 POLR3GP2-201ENST00000588366 668 ntBASIC4.4□□□□□ -1.71
MSX2P35548 RPL7P50-201ENST00000600588 727 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AL121992.2-201ENST00000606262 256 ntBASIC4.4□□□□□ -1.71
MSX2P35548 Z98200.1-201ENST00000607298 470 ntBASIC4.4□□□□□ -1.71
MSX2P35548 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC4.4□□□□□ -1.71
MSX2P35548 AC040896.1-201ENST00000613819 479 ntBASIC4.4□□□□□ -1.71
MSX2P35548 MIR6837-201ENST00000620884 64 ntBASIC4.4□□□□□ -1.71
MSX2P35548 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
MSX2P35548 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.4□□□□□ -1.71
MSX2P35548 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC4.4□□□□□ -1.71
MSX2P35548 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
MSX2P35548 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
MSX2P35548 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
MSX2P35548 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
MSX2P35548 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
MSX2P35548 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms