Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
HOXC4P09017 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXC4P09017 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXC4P09017 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
HOXC4P09017 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXC4P09017 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.93□□□□□ -1.94
HOXC4P09017 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
HOXC4P09017 ZNF876P-202ENST00000398732 1485 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AC111188.2-201ENST00000529697 1387 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXC4P09017 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
HOXC4P09017 Y_RNA.111-201ENST00000363248 100 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 RNU6-236P-201ENST00000363886 106 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC4P09017 RNU6-441P-201ENST00000384545 106 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 U3.26-201ENST00000391236 204 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 SAR1AP2-201ENST00000392696 594 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 RNA5SP56-201ENST00000410277 118 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC4P09017 AL356320.2-201ENST00000417263 507 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC4P09017 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC4P09017 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXC4P09017 AC093151.1-201ENST00000427711 313 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AC022018.1-201ENST00000430685 241 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC4P09017 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC4P09017 AL929288.2-201ENST00000446368 407 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 RPL7P59-201ENST00000447700 943 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AL589880.1-201ENST00000448271 287 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 RPL7P52-201ENST00000449200 742 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXC4P09017 NPM1P13-201ENST00000452663 865 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 RPS24P6-201ENST00000452670 400 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AL122001.1-201ENST00000457027 370 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 HMGB1P22-201ENST00000505315 124 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC4P09017 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC4P09017 HMGB1P1-201ENST00000522557 636 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 OR5G4P-201ENST00000525251 760 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC4P09017 LRRC6P1-201ENST00000532188 885 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXC4P09017 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC4P09017 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.93□□□□□ -1.94
HOXC4P09017 MTND4P33-201ENST00000556706 766 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AC106782.4-201ENST00000568264 210 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.93□□□□□ -1.94
HOXC4P09017 MTND3P13-201ENST00000574391 343 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXC4P09017 AC061975.8-201ENST00000587058 721 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AL669831.4-202ENST00000590817 238 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 BNIP3P24-201ENST00000593398 557 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2.93□□□□□ -1.94
HOXC4P09017 AC091057.2-201ENST00000602594 792 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AL355812.1-201ENST00000603215 216 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AC013444.2-201ENST00000603317 787 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 DPRXP5-201ENST00000604662 539 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AL138478.1-201ENST00000612252 832 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AC007318.2-201ENST00000620999 243 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 AC017037.3-201ENST00000625016 472 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.93□□□□□ -1.94
HOXC4P09017 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.93□□□□□ -1.94
HOXC4P09017 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HOXC4P09017 MTND5P31-201ENST00000419366 1374 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 MTND4P34-201ENST00000572715 1371 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 U3.6-201ENST00000363622 211 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 RNU6-7-201ENST00000364784 107 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 RNU6-8-201ENST00000365467 107 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC2.92□□□□□ -1.94
HOXC4P09017 Y_RNA.493-201ENST00000384422 102 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 RNU6-636P-201ENST00000384598 107 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 RNY3P9-201ENST00000384727 106 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AL136310.1-201ENST00000404926 654 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AC107081.1-201ENST00000414975 361 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXC4P09017 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXC4P09017 AC233981.1-201ENST00000423224 461 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AC002542.1-201ENST00000440683 193 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AC005002.1-201ENST00000447458 540 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXC4P09017 Z99714.1-201ENST00000450463 807 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AC079203.1-201ENST00000487972 404 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AL024509.2-201ENST00000493462 493 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXC4P09017 MTCO2P32-201ENST00000514865 403 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.92□□□□□ -1.94
HOXC4P09017 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXC4P09017 MTCO2P15-201ENST00000532655 656 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AC074051.3-201ENST00000570238 358 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC2.92□□□□□ -1.94
HOXC4P09017 AC006504.3-201ENST00000586818 523 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AC103881.1-201ENST00000603476 538 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AP004247.3-201ENST00000608682 624 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AC068722.2-201ENST00000618734 544 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AC091304.6-201ENST00000619761 202 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.92□□□□□ -1.94
HOXC4P09017 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
HOXC4P09017 AC073055.1-201ENST00000456901 1621 ntBASIC2.92□□□□□ -1.94
HOXC4P09017 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms