Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 CYCSP30-201ENST00000546447 172 ntBASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AC023161.2-201ENST00000551218 780 ntBASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AC124947.2-202ENST00000552735 133 ntBASIC3.05□□□□□ -1.92
FOXA2Q9Y261 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AC009097.3-201ENST00000563557 1018 ntBASIC3.05□□□□□ -1.92
FOXA2Q9Y261 MTCO3P24-201ENST00000572729 782 ntBASIC3.05□□□□□ -1.92
FOXA2Q9Y261 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AC022022.2-201ENST00000602989 360 ntBASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AL138880.2-201ENST00000616214 239 ntBASIC3.05□□□□□ -1.92
FOXA2Q9Y261 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 AC009902.3-201ENST00000606235 2172 ntBASIC3.05□□□□□ -1.92
FOXA2Q9Y261 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA2Q9Y261 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 MIR423-201ENST00000362201 94 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 Y_RNA.18-201ENST00000362461 102 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 SNORA23-201ENST00000365128 182 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 SNORA57.1-201ENST00000391227 145 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 SOD2P1-201ENST00000396543 562 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 MTND4P13-201ENST00000402078 1023 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 MIR1193-201ENST00000408109 78 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 HSPE1P1-201ENST00000421494 318 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 Z74696.2-201ENST00000436514 498 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 RSU1P2-202ENST00000437884 485 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AL031183.1-201ENST00000457667 207 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 RAC1P2-201ENST00000511164 579 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 SCARNA15.2-201ENST00000516409 127 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC068587.4-201ENST00000533893 186 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AL133271.1-201ENST00000538229 291 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AL355836.1-201ENST00000555951 870 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC136618.2-201ENST00000575091 400 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC079089.3-201ENST00000603094 673 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 HSPE1P7-201ENST00000604681 321 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC013244.3-201ENST00000605614 388 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC097468.3-201ENST00000607956 456 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC024560.3-201ENST00000608482 349 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AC007490.1-201ENST00000624321 703 ntBASIC3.04□□□□□ -1.92
FOXA2Q9Y261 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA2Q9Y261 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 SNORD113-6-201ENST00000363345 75 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 SNORA14A-201ENST00000364773 135 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 RNU6-213P-201ENST00000384051 104 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 RNU6-754P-201ENST00000391166 107 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 Z98941.1-201ENST00000407764 100 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 MIR1305-201ENST00000408300 86 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 NDUFB4P7-201ENST00000423198 363 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC234781.2-201ENST00000426370 994 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 UBE2FP3-201ENST00000436366 524 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AL591719.1-201ENST00000444669 744 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 MTND2P14-201ENST00000482139 351 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 RN7SL323P-201ENST00000494712 295 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms