Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 MFSD8-236ENST00000641509 4050 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 AC005832.2-201ENST00000538921 1430 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS28Q9UK41 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC092326.2-201ENST00000624772 1561 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AL161912.2-201ENST00000565707 3007 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS28Q9UK41 RNA5SP51-201ENST00000364750 119 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 MIR670-201ENST00000390142 98 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 TAS2R15P-201ENST00000390674 928 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 RNU6-328P-201ENST00000390887 106 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS28Q9UK41 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 UBE2V1P13-201ENST00000436983 439 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 RSU1P2-202ENST00000437884 485 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AL591503.2-201ENST00000442314 1005 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AL606662.1-201ENST00000445763 553 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AL592447.1-201ENST00000447592 540 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 RPS27AP1-201ENST00000475545 471 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC022447.3-201ENST00000506865 495 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 POU5F1P7-201ENST00000508759 541 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 RN7SKP18-201ENST00000516005 275 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 FAM60DP-201ENST00000524174 632 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC087276.1-201ENST00000529659 480 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 AP000811.1-201ENST00000603803 651 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC140725.3-201ENST00000616193 880 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC009159.2-201ENST00000617603 606 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC079597.1-201ENST00000624306 508 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 PCMTD1P7-201ENST00000634506 357 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 U6.98-201ENST00000637157 84 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 ZNF807-201ENST00000328088 1707 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC118273.1-201ENST00000525324 3006 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC007256.1-201ENST00000392253 2765 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS28Q9UK41 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS28Q9UK41 AC090740.1-201ENST00000623193 2262 ntBASIC3.77□□□□□ -1.81
VPS28Q9UK41 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS28Q9UK41 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS28Q9UK41 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS28Q9UK41 SNORA73.2-201ENST00000364946 201 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 Y_RNA.302-201ENST00000364997 102 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 RNU6-114P-201ENST00000384704 105 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 U3.20-201ENST00000390909 217 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 PTMAP5-201ENST00000393073 333 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AL590084.2-201ENST00000401481 382 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AL391417.1-201ENST00000404100 426 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 MIR1305-201ENST00000408300 86 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS28Q9UK41 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 ATP5A1P2-201ENST00000412323 255 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC007390.1-201ENST00000415722 356 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 HMGB3P20-201ENST00000417997 600 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 UBE2D3P2-201ENST00000424409 445 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC090774.1-201ENST00000435925 246 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC091862.1-201ENST00000438016 1100 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 RPL26P6-201ENST00000440913 438 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 VN1R34P-201ENST00000447387 883 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC104619.4-201ENST00000510773 249 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 SNORA70.16-201ENST00000516390 95 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC026403.1-201ENST00000518938 295 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC125611.2-201ENST00000551907 647 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 SETP2-201ENST00000553886 926 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 MIR3921-201ENST00000577308 85 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 AC105224.1-201ENST00000587055 421 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS28Q9UK41 MIR92B-201ENST00000607575 96 ntBASIC3.76□□□□□ -1.81
VPS28Q9UK41 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms