Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 AC016877.3-201ENST00000606778 504 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 RNU4-5P-201ENST00000607255 135 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 AC016597.2-201ENST00000613256 341 ntBASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.41□□□□□ -1.86
VPS54Q9P1Q0 AC244517.1-201ENST00000606030 2086 ntBASIC3.4□□□□□ -1.86
VPS54Q9P1Q0 MTCO1P23-201ENST00000415223 1526 ntBASIC3.4□□□□□ -1.86
VPS54Q9P1Q0 AC106754.1-201ENST00000562632 1513 ntBASIC3.4□□□□□ -1.86
VPS54Q9P1Q0 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.4□□□□□ -1.86
VPS54Q9P1Q0 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 U3.29-201ENST00000391296 212 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 SNORA48.8-201ENST00000391324 134 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AL136310.1-201ENST00000404926 654 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 U3.42-201ENST00000408746 214 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 RPS3AP37-201ENST00000419176 745 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 EEF1A1P39-201ENST00000440791 250 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 RPL23AP76-201ENST00000441860 458 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 RSL24D1P3-201ENST00000449255 495 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AC005410.1-202ENST00000460347 485 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 HMGB1P25-201ENST00000468402 607 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 RPL27AP5-201ENST00000469428 449 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AL024509.2-201ENST00000493462 493 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AP002404.1-201ENST00000532005 451 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 OR4T1P-201ENST00000554933 911 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AL132657.2-201ENST00000564417 358 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 MIR4474-201ENST00000579189 78 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AC011816.2-201ENST00000607089 556 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AC092650.2-201ENST00000619984 902 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 AC120349.2-201ENST00000625002 298 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 CYP3A51P-201ENST00000633513 256 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 U6.101-201ENST00000637707 76 ntBASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS54Q9P1Q0 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC118273.1-201ENST00000525324 3006 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 SNRPEP3-201ENST00000338402 276 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 RNU6-216P-201ENST00000363282 104 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 MIR128-1-201ENST00000384921 82 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 SNORA48.5-201ENST00000391143 135 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 SNORA11.1-201ENST00000408133 129 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 RNU6-712P-201ENST00000410558 100 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 MTCO2P8-201ENST00000412213 658 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 MTATP6P20-201ENST00000414147 562 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AL356320.2-201ENST00000417263 507 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 RPL7P52-201ENST00000449200 742 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AL162389.1-201ENST00000449233 177 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC011979.1-201ENST00000472300 483 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 RPS29P2-201ENST00000479278 136 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 RNU6-27P-201ENST00000516146 107 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 RN7SKP43-201ENST00000516173 320 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 SCARNA1-201ENST00000517138 166 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC125611.1-201ENST00000549563 229 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC023813.2-201ENST00000564321 469 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 MTCO2P2-201ENST00000591258 225 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC021749.1-201ENST00000604322 607 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC022960.3-201ENST00000619794 441 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC022509.4-201ENST00000621404 572 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC091925.2-201ENST00000625059 256 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AL035425.3-201ENST00000564206 4996 ntBASIC3.39□□□□□ -1.87
VPS54Q9P1Q0 AL353746.1-201ENST00000566293 6881 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AL136164.4-201ENST00000625013 2135 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms