Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AP001330.4-201ENST00000604350 154 ntBASIC2.7□□□□□ -1.98
TREX1Q9NSU2 AL021368.1-201ENST00000607490 540 ntBASIC2.7□□□□□ -1.98
TREX1Q9NSU2 AC040168.1-201ENST00000623594 991 ntBASIC2.7□□□□□ -1.98
TREX1Q9NSU2 TAB3P1-202ENST00000452645 1634 ntBASIC2.7□□□□□ -1.98
TREX1Q9NSU2 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.7□□□□□ -1.98
TREX1Q9NSU2 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.7□□□□□ -1.98
TREX1Q9NSU2 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
TREX1Q9NSU2 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC244517.1-201ENST00000606030 2086 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC092447.7-201ENST00000422212 1621 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 RNU6-115P-201ENST00000364310 107 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 SNORD82-201ENST00000365530 70 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 U6.112-201ENST00000384129 70 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 TAF13P2-201ENST00000416876 286 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AL137014.1-201ENST00000420490 1226 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 HMGN2P30-201ENST00000423237 256 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC087499.2-201ENST00000432861 149 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 TRBV26-201ENST00000456572 344 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 RNU7-140P-201ENST00000459546 60 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 XACT-201ENST00000468762 497 ntTSL 5 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC048346.1-201ENST00000510247 144 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 SNORA70.24-201ENST00000517233 118 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 SNRPGP16-201ENST00000533275 226 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 MIR4789-201ENST00000577469 82 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 GLUD1P4-201ENST00000590914 418 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC020895.1-201ENST00000595362 272 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC098483.2-201ENST00000603158 454 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AL161756.2-201ENST00000604597 246 ntBASIC2.69□□□□□ -1.98
TREX1Q9NSU2 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.69□□□□□ -1.98
TREX1Q9NSU2 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 SNORD21-201ENST00000383953 95 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 RNU6-730P-201ENST00000383954 104 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 RNU1-109P-201ENST00000383960 147 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 SNORA9-201ENST00000384215 133 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 TMSB4XP8-201ENST00000402089 135 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 BX682237.1-201ENST00000415016 335 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 TMSB4XP6-201ENST00000415187 135 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AL513175.2-201ENST00000422071 443 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 TMSB4XP1-201ENST00000424567 135 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 RPL23AP16-201ENST00000441715 421 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 ST13P20-201ENST00000447996 1065 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 OR51B8P-201ENST00000449892 769 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 RPS20P24-201ENST00000457473 361 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AC078857.1-201ENST00000469870 667 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 RN7SL499P-201ENST00000481141 276 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AC026427.2-201ENST00000506228 536 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 SEM1P1-201ENST00000506694 209 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AC121161.1-201ENST00000510606 652 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 ZNF705CP-201ENST00000530515 889 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 MIR3200-201ENST00000580767 85 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AL121594.5-201ENST00000631724 573 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 ZNF833P-201ENST00000424938 1494 ntBASIC2.68□□□□□ -1.98
TREX1Q9NSU2 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
TREX1Q9NSU2 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.67□□□□□ -1.98
TREX1Q9NSU2 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC2.67□□□□□ -1.98
TREX1Q9NSU2 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.67□□□□□ -1.98
TREX1Q9NSU2 AC010733.2-201ENST00000589496 5702 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 RNU6-1180P-201ENST00000364935 107 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 RNU6-1074P-201ENST00000383995 104 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 MIR128-1-201ENST00000384921 82 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 MIR592-201ENST00000384959 97 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 MIR9-1-201ENST00000385198 89 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 SNORA48.2-201ENST00000390926 124 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 MTCO2P31-201ENST00000402702 684 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 RNU6-712P-201ENST00000410558 100 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 AL513477.1-202ENST00000417061 214 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 TMEM167AP1-201ENST00000423409 219 ntBASIC2.67□□□□□ -1.98
TREX1Q9NSU2 AC079780.1-201ENST00000428259 207 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms