Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP39Q53GS9 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.6□□□□□ -1.67
USP39Q53GS9 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.6□□□□□ -1.67
USP39Q53GS9 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP39Q53GS9 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
USP39Q53GS9 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USP39Q53GS9 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USP39Q53GS9 Y_RNA.184-201ENST00000363884 108 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.59□□□□□ -1.67
USP39Q53GS9 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC4.59□□□□□ -1.67
USP39Q53GS9 RNU6-474P-201ENST00000384243 107 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 RPL23AP32-201ENST00000395315 459 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AL031119.1-201ENST00000404707 1879 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AL445189.1-201ENST00000405722 338 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 RNU6-272P-201ENST00000411028 104 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AC127391.1-201ENST00000411737 98 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 RPL23AP26-201ENST00000412728 464 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 TMSB10P2-201ENST00000416049 131 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.59□□□□□ -1.67
USP39Q53GS9 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.59□□□□□ -1.67
USP39Q53GS9 RPL23AP93-201ENST00000440847 484 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AC016691.1-201ENST00000441321 413 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 EEF1A1P1-201ENST00000447052 739 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 RNU6-261P-201ENST00000459506 102 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 RN7SL98P-201ENST00000462271 300 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 RPS15AP36-201ENST00000492022 382 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
USP39Q53GS9 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.59□□□□□ -1.67
USP39Q53GS9 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.59□□□□□ -1.67
USP39Q53GS9 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.59□□□□□ -1.67
USP39Q53GS9 SNORA40.12-201ENST00000516329 111 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 Vault.3-201ENST00000516676 95 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.59□□□□□ -1.67
USP39Q53GS9 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.59□□□□□ -1.67
USP39Q53GS9 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.59□□□□□ -1.67
USP39Q53GS9 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.59□□□□□ -1.67
USP39Q53GS9 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
USP39Q53GS9 DEFB109D-201ENST00000529497 240 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
USP39Q53GS9 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.59□□□□□ -1.67
USP39Q53GS9 AC106785.1-201ENST00000565935 262 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.59□□□□□ -1.67
USP39Q53GS9 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.59□□□□□ -1.67
USP39Q53GS9 VN1R84P-201ENST00000593697 235 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AC021646.1-201ENST00000605469 484 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 SNORD91B-202ENST00000608459 222 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AL133173.2-201ENST00000614270 90 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AC233309.1-201ENST00000619522 751 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 AC034229.5-201ENST00000624258 185 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 MIR6715B-201ENST00000637172 77 ntBASIC4.59□□□□□ -1.67
USP39Q53GS9 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USP39Q53GS9 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
USP39Q53GS9 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
USP39Q53GS9 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
USP39Q53GS9 AL139811.1-201ENST00000424779 2299 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
USP39Q53GS9 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.58□□□□□ -1.68
USP39Q53GS9 IQCB2P-201ENST00000401788 1633 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USP39Q53GS9 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.58□□□□□ -1.68
USP39Q53GS9 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USP39Q53GS9 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.58□□□□□ -1.68
USP39Q53GS9 RPL7P26-201ENST00000333817 754 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.58□□□□□ -1.68
USP39Q53GS9 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USP39Q53GS9 Y_RNA.46-201ENST00000362695 102 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 Y_RNA.128-201ENST00000363391 112 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 Y_RNA.146-201ENST00000363549 102 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 SNORD42.2-201ENST00000365570 69 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 RNU6-1279P-201ENST00000383917 103 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USP39Q53GS9 RN7SKP140-201ENST00000411196 284 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 AL161631.1-201ENST00000417933 486 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.58□□□□□ -1.68
USP39Q53GS9 ELOCP4-201ENST00000420090 333 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.58□□□□□ -1.68
USP39Q53GS9 IPO7P1-201ENST00000442031 636 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USP39Q53GS9 AL359073.1-201ENST00000448036 403 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.58□□□□□ -1.68
USP39Q53GS9 RPL21P71-201ENST00000465598 459 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USP39Q53GS9 RN7SL817P-201ENST00000480777 288 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 AC091167.1-201ENST00000492017 396 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.58□□□□□ -1.68
USP39Q53GS9 PCBP2P3-201ENST00000509726 843 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.58□□□□□ -1.68
USP39Q53GS9 RN7SKP283-201ENST00000517197 270 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.58□□□□□ -1.68
USP39Q53GS9 AF279873.1-201ENST00000523393 313 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.58□□□□□ -1.68
USP39Q53GS9 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.58□□□□□ -1.68
USP39Q53GS9 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.58□□□□□ -1.68
USP39Q53GS9 MIR3167-201ENST00000579623 85 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.58□□□□□ -1.68
USP39Q53GS9 SNRPGP17-201ENST00000603780 214 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.58□□□□□ -1.68
USP39Q53GS9 AC090617.10-201ENST00000624308 134 ntBASIC4.58□□□□□ -1.68
USP39Q53GS9 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.58□□□□□ -1.68
USP39Q53GS9 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms