Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 RPL23AP38-201ENST00000423801 469 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 MTND1P2-201ENST00000430604 821 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AC002486.1-201ENST00000435098 391 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 MTATP6P23-201ENST00000440153 476 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 PPIAP3-201ENST00000450588 505 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 FABP3P2-201ENST00000453169 399 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AC009963.2-201ENST00000453431 138 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 RPL23AP81-201ENST00000455252 467 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 RPL7P19-201ENST00000469948 618 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AC023194.1-201ENST00000493084 308 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AC010342.1-201ENST00000514047 877 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 RNU4-60P-201ENST00000517239 135 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AL512310.1-201ENST00000548639 172 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 TVP23BP1-201ENST00000557500 617 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 HMGB1P33-201ENST00000563485 527 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 CYP4A43P-201ENST00000568156 121 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 MIR3167-201ENST00000579623 85 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 LLPHP1-201ENST00000603571 367 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 RNA5SP108-201ENST00000605921 117 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 uc_338.12-201ENST00000616344 181 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AL356585.4-201ENST00000623078 1229 ntBASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PTCHD3Q3KNS1 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 MIR513A2-201ENST00000385249 127 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 MIR708-201ENST00000390708 88 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 RPL7P60-201ENST00000397636 735 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 MIR1277-201ENST00000408536 78 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 RNA5SP36-201ENST00000410197 133 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC119618.1-201ENST00000434191 222 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 MRPS18BP2-201ENST00000434310 759 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC122718.1-201ENST00000439448 744 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 MTND4P18-201ENST00000447010 465 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 RPL38P1-201ENST00000460914 211 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 FAM133DP-201ENST00000464802 691 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 RPL31P58-201ENST00000469001 379 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 ARL4AP2-201ENST00000507378 601 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 ARL2BPP6-201ENST00000512757 439 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC017037.2-201ENST00000513850 890 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 RNA5SP73-201ENST00000516744 108 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-528P-201ENST00000516926 100 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AP003730.1-201ENST00000524605 285 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 OR4R3P-201ENST00000525084 838 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 OR5AQ1P-201ENST00000527596 927 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AL157687.1-201ENST00000554853 619 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 RPS3AP4-201ENST00000555161 764 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC007224.1-201ENST00000564410 144 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AL020997.2-201ENST00000602607 184 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC008638.3-201ENST00000603341 463 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AC007363.1-201ENST00000604736 620 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AL031666.3-201ENST00000609320 1006 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 ZYXP1-201ENST00000617638 118 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 U6.42-201ENST00000618440 107 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 AL159972.1-201ENST00000625150 448 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 MIR3688-2-201ENST00000636963 87 ntBASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTCHD3Q3KNS1 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms