Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC1.38□□□□□ -2.19
PRKDCP78527 AC019159.1-201ENST00000605094 187 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 AC120053.1-201ENST00000607706 736 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
PRKDCP78527 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC1.38□□□□□ -2.19
PRKDCP78527 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC1.38□□□□□ -2.19
PRKDCP78527 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC1.38□□□□□ -2.19
PRKDCP78527 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
PRKDCP78527 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
PRKDCP78527 MIR151B-201ENST00000584249 96 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC1.38□□□□□ -2.19
PRKDCP78527 AL645939.4-201ENST00000604495 135 ntBASIC1.38□□□□□ -2.19
PRKDCP78527 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC1.38□□□□□ -2.19
PRKDCP78527 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
PRKDCP78527 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC1.37□□□□□ -2.19
PRKDCP78527 OR5H15-201ENST00000383696 930 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 AC092155.2-201ENST00000454675 477 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 AC021146.8-201ENST00000507455 733 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 AP001804.3-201ENST00000525146 880 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.37□□□□□ -2.19
PRKDCP78527 AC006254.3-201ENST00000603353 884 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
PRKDCP78527 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
PRKDCP78527 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.37□□□□□ -2.19
PRKDCP78527 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC1.37□□□□□ -2.19
PRKDCP78527 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC1.37□□□□□ -2.19
PRKDCP78527 AF186190.1-201ENST00000517470 480 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
PRKDCP78527 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
PRKDCP78527 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
PRKDCP78527 GSTA12P-201ENST00000402398 508 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 AL591704.1-201ENST00000432574 275 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC1.37□□□□□ -2.19
PRKDCP78527 AP002748.2-201ENST00000528671 348 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 PTP4A1P6-201ENST00000531034 478 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC1.37□□□□□ -2.19
PRKDCP78527 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.37□□□□□ -2.19
PRKDCP78527 AC010297.1-201ENST00000623948 149 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 HPVC1-201ENST00000629899 1198 ntBASIC1.37□□□□□ -2.19
PRKDCP78527 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC1.37□□□□□ -2.19
PRKDCP78527 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC1.37□□□□□ -2.19
PRKDCP78527 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC1.36□□□□□ -2.19
PRKDCP78527 FTX-214ENST00000638437 12267 ntTSL 5 BASIC1.36□□□□□ -2.19
PRKDCP78527 Y_RNA.30-201ENST00000362572 97 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 RNA5SP37-201ENST00000365420 130 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.36□□□□□ -2.19
PRKDCP78527 NDUFB4P5-201ENST00000415445 361 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 HMGN1P7-201ENST00000491722 313 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.36□□□□□ -2.19
PRKDCP78527 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
PRKDCP78527 AL133216.2-202ENST00000634512 349 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
PRKDCP78527 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
PRKDCP78527 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
PRKDCP78527 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC1.36□□□□□ -2.19
PRKDCP78527 MIR1294-201ENST00000408503 142 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 AIMP1P1-201ENST00000418670 937 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC1.36□□□□□ -2.19
PRKDCP78527 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC1.36□□□□□ -2.19
PRKDCP78527 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.36□□□□□ -2.19
PRKDCP78527 PIGFP3-201ENST00000441918 722 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 SNRPFP4-201ENST00000456366 242 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.36□□□□□ -2.19
PRKDCP78527 SNORA70.14-201ENST00000516205 110 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC1.36□□□□□ -2.19
PRKDCP78527 AC073387.2-201ENST00000604797 784 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.36□□□□□ -2.19
PRKDCP78527 RNU2-32P-201ENST00000411193 191 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 SSXP1-201ENST00000453640 473 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 MTND3P6-201ENST00000485242 339 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC1.36□□□□□ -2.19
PRKDCP78527 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC1.36□□□□□ -2.19
PRKDCP78527 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.36□□□□□ -2.19
PRKDCP78527 AC002487.1-201ENST00000604565 994 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 OR10AB1P-201ENST00000609613 938 ntBASIC1.36□□□□□ -2.19
PRKDCP78527 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
PRKDCP78527 RNU1-51P-201ENST00000365345 176 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 CALM1P2-201ENST00000452941 448 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 RPL23AP55-201ENST00000498163 452 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.35□□□□□ -2.19
PRKDCP78527 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC1.35□□□□□ -2.19
PRKDCP78527 OR5AQ1P-202ENST00000641257 1534 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 AC080100.1-201ENST00000624239 5356 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC1.35□□□□□ -2.19
PRKDCP78527 MUPP-201ENST00000438111 566 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC1.35□□□□□ -2.19
PRKDCP78527 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.35□□□□□ -2.19
PRKDCP78527 AL845331.3-202ENST00000562856 261 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 AC025281.1-201ENST00000567026 265 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.35□□□□□ -2.19
PRKDCP78527 OR4G1P-201ENST00000588632 938 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.35□□□□□ -2.19
PRKDCP78527 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC1.35□□□□□ -2.19
PRKDCP78527 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
PRKDCP78527 SNORA31-201ENST00000362607 130 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 SNORA48.3-201ENST00000391081 134 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC1.35□□□□□ -2.19
PRKDCP78527 FAM92A1P1-201ENST00000528023 890 ntBASIC1.35□□□□□ -2.19
PRKDCP78527 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms