Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC091304.9-201ENST00000612091 226 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.6□□□□□ -1.67
SMARCA1P28370 U6atac.1-201ENST00000616025 117 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 AL596245.1-201ENST00000618994 362 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.6□□□□□ -1.67
SMARCA1P28370 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC4.6□□□□□ -1.67
SMARCA1P28370 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SMARCA1P28370 AC092447.10-201ENST00000620607 1652 ntBASIC4.6□□□□□ -1.67
SMARCA1P28370 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.6□□□□□ -1.67
SMARCA1P28370 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.6□□□□□ -1.67
SMARCA1P28370 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SMARCA1P28370 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
SMARCA1P28370 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SMARCA1P28370 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SMARCA1P28370 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SMARCA1P28370 AC007685.1-201ENST00000329806 452 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SMARCA1P28370 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SMARCA1P28370 Y_RNA.234-201ENST00000364409 97 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.59□□□□□ -1.67
SMARCA1P28370 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.59□□□□□ -1.67
SMARCA1P28370 Y_RNA.548-201ENST00000384656 105 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 MIR93-201ENST00000385024 80 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SMARCA1P28370 U3.29-201ENST00000391296 212 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.59□□□□□ -1.67
SMARCA1P28370 AL356421.1-201ENST00000403255 413 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 MIR548F1-201ENST00000408667 84 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 RNU4-6P-201ENST00000410804 122 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 AC078974.1-201ENST00000411597 223 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.59□□□□□ -1.67
SMARCA1P28370 MTCYBP5-201ENST00000423752 1135 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 ELOCP18-201ENST00000434209 337 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 AC073614.1-201ENST00000438690 650 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 HMGB1P37-201ENST00000439613 609 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 AL353748.1-201ENST00000440753 474 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.59□□□□□ -1.67
SMARCA1P28370 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.59□□□□□ -1.67
SMARCA1P28370 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SMARCA1P28370 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.59□□□□□ -1.67
SMARCA1P28370 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.59□□□□□ -1.67
SMARCA1P28370 AC011352.1-201ENST00000512300 793 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.59□□□□□ -1.67
SMARCA1P28370 RN7SKP244-201ENST00000516513 307 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 RNA5SP179-201ENST00000517284 121 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.59□□□□□ -1.67
SMARCA1P28370 MED28P5-201ENST00000528254 438 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.59□□□□□ -1.67
SMARCA1P28370 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.67
SMARCA1P28370 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.59□□□□□ -1.67
SMARCA1P28370 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC4.59□□□□□ -1.67
SMARCA1P28370 AC087481.2-201ENST00000565492 330 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 TPRKBP2-201ENST00000565969 475 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.59□□□□□ -1.67
SMARCA1P28370 VN1R79P-201ENST00000593540 513 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 VN1R85P-201ENST00000601587 426 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 AC091167.4-201ENST00000605079 184 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 AC103710.1-201ENST00000610003 901 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 AC024941.1-201ENST00000612250 334 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.59□□□□□ -1.67
SMARCA1P28370 AC138649.3-201ENST00000622154 254 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.59□□□□□ -1.67
SMARCA1P28370 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.59□□□□□ -1.67
SMARCA1P28370 AC110994.2-201ENST00000635481 492 ntBASIC4.59□□□□□ -1.67
SMARCA1P28370 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.59□□□□□ -1.67
SMARCA1P28370 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.59□□□□□ -1.68
SMARCA1P28370 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SMARCA1P28370 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SMARCA1P28370 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SMARCA1P28370 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
SMARCA1P28370 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SMARCA1P28370 AC093536.2-201ENST00000565257 1406 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 ANKRD36BP1-202ENST00000604892 1417 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.58□□□□□ -1.68
SMARCA1P28370 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SMARCA1P28370 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SMARCA1P28370 RN7SKP280-201ENST00000364196 304 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 RNY4P34-201ENST00000364779 95 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.58□□□□□ -1.68
SMARCA1P28370 RNA5SP56-201ENST00000410277 118 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 RNU6-195P-201ENST00000411352 109 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.58□□□□□ -1.68
SMARCA1P28370 RPL7AP73-201ENST00000413490 353 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 BX295541.1-201ENST00000417774 250 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 AL589872.1-201ENST00000426602 288 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
SMARCA1P28370 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.58□□□□□ -1.68
SMARCA1P28370 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.58□□□□□ -1.68
SMARCA1P28370 RPL7P52-201ENST00000449200 742 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.58□□□□□ -1.68
SMARCA1P28370 AC099563.1-201ENST00000456086 418 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.58□□□□□ -1.68
SMARCA1P28370 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.58□□□□□ -1.68
SMARCA1P28370 RPL31P61-201ENST00000496160 376 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 AC006390.1-201ENST00000508068 283 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 MTCO2P4-201ENST00000517968 247 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 AC087369.1-201ENST00000520775 996 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.58□□□□□ -1.68
SMARCA1P28370 AP003385.6-201ENST00000531603 374 ntBASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms