Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL6A3P12111 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL6A3P12111 RPL23AP39-201ENST00000415533 405 ntBASIC1.97□□□□□ -2.09
COL6A3P12111 FTH1P12-201ENST00000432137 551 ntBASIC1.97□□□□□ -2.09
COL6A3P12111 LAMTOR5P1-201ENST00000444290 270 ntBASIC1.97□□□□□ -2.09
COL6A3P12111 AC120053.1-201ENST00000607706 736 ntBASIC1.97□□□□□ -2.09
COL6A3P12111 AC006023.2-201ENST00000609916 167 ntBASIC1.97□□□□□ -2.09
COL6A3P12111 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.97□□□□□ -2.09
COL6A3P12111 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 SET-203ENST00000372688 801 ntTSL 2 BASIC1.96□□□□□ -2.1
COL6A3P12111 NDUFB4P5-201ENST00000415445 361 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 AC005005.2-201ENST00000420779 380 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 RNA5SP395-201ENST00000516567 118 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 AP003467.2-201ENST00000520175 319 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.96□□□□□ -2.1
COL6A3P12111 AC069234.5-201ENST00000611056 416 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.96□□□□□ -2.1
COL6A3P12111 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
COL6A3P12111 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
COL6A3P12111 DNAJC19P6-201ENST00000401853 280 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC1.96□□□□□ -2.1
COL6A3P12111 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.96□□□□□ -2.1
COL6A3P12111 RPL21P18-201ENST00000469899 480 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.96□□□□□ -2.1
COL6A3P12111 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.96□□□□□ -2.1
COL6A3P12111 RNU2-58P-201ENST00000516403 183 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.96□□□□□ -2.1
COL6A3P12111 AC245036.5-201ENST00000596330 847 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC1.96□□□□□ -2.1
COL6A3P12111 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
COL6A3P12111 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
COL6A3P12111 Y_RNA.48-201ENST00000362710 103 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 RNU6-882P-201ENST00000391025 103 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 RN7SKP123-201ENST00000410732 291 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC1.96□□□□□ -2.1
COL6A3P12111 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL6A3P12111 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC1.96□□□□□ -2.1
COL6A3P12111 AC093775.1-201ENST00000624154 1868 ntBASIC1.96□□□□□ -2.1
COL6A3P12111 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL6A3P12111 AC009501.3-201ENST00000605001 1352 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL6A3P12111 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL6A3P12111 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.95□□□□□ -2.1
COL6A3P12111 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL6A3P12111 POLHP1-201ENST00000411806 470 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC1.95□□□□□ -2.1
COL6A3P12111 RPS27P27-201ENST00000498779 255 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC1.95□□□□□ -2.1
COL6A3P12111 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC1.95□□□□□ -2.1
COL6A3P12111 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL6A3P12111 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC1.95□□□□□ -2.1
COL6A3P12111 RNU6-115P-201ENST00000364310 107 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 RNU4-41P-201ENST00000364426 143 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 SAR1AP2-201ENST00000392696 594 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 HMGB1P11-201ENST00000413899 637 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 AIMP1P1-201ENST00000418670 937 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC1.95□□□□□ -2.1
COL6A3P12111 AC244505.5-201ENST00000443639 207 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 AC079776.3-201ENST00000450665 370 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 AL445669.2-201ENST00000454425 421 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC1.95□□□□□ -2.1
COL6A3P12111 AL356575.1-201ENST00000603008 283 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 AL627309.6-201ENST00000606857 840 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 HPVC1-201ENST00000629899 1198 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 CDC27P3-201ENST00000635418 1910 ntBASIC1.95□□□□□ -2.1
COL6A3P12111 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC1.95□□□□□ -2.1
COL6A3P12111 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
COL6A3P12111 WWP1P1-201ENST00000466609 2769 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 Z98749.2-208ENST00000381646 500 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 SNORA51.12-201ENST00000384448 134 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC1.94□□□□□ -2.1
COL6A3P12111 AC055876.1-202ENST00000567053 138 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 AL645939.4-201ENST00000604495 135 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
COL6A3P12111 RNA5SP257-201ENST00000363023 116 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 RNU6-1105P-201ENST00000384774 107 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 TRIAP1P1-201ENST00000427062 225 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 HMGB1P12-201ENST00000438594 598 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 AC011979.1-201ENST00000472300 483 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 NIFKP8-201ENST00000560500 874 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.94□□□□□ -2.1
COL6A3P12111 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
COL6A3P12111 RNU2-6P-201ENST00000411404 190 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC1.94□□□□□ -2.1
COL6A3P12111 BNIP3P2-201ENST00000441221 577 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 MIR1273G-201ENST00000577677 100 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 AL645944.1-201ENST00000603857 493 ntBASIC1.94□□□□□ -2.1
COL6A3P12111 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
COL6A3P12111 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
COL6A3P12111 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
COL6A3P12111 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.93□□□□□ -2.1
COL6A3P12111 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC1.93□□□□□ -2.1
COL6A3P12111 AL022400.1-201ENST00000423946 935 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 AC034222.1-201ENST00000494052 532 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.93□□□□□ -2.1
COL6A3P12111 AC087854.1-201ENST00000519706 414 ntBASIC1.93□□□□□ -2.1
COL6A3P12111 AC093331.1-201ENST00000521474 169 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms