Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNA5SP322-201ENST00000363617 119 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 RNU1-32P-201ENST00000363937 159 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 Y_RNA.296-201ENST00000364930 108 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 RNU6-1279P-201ENST00000383917 103 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 U3.20-201ENST00000390909 217 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AL049693.1-201ENST00000402760 611 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AL603766.1-201ENST00000407763 664 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 RPL36AP36-201ENST00000418616 301 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 PIGFP2-201ENST00000421400 651 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 RPL29P29-201ENST00000448725 423 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 RPS17P13-201ENST00000448974 407 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 RN7SKP116-201ENST00000516902 319 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AC022616.6-201ENST00000520479 119 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AC245014.2-201ENST00000603689 287 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AL365503.1-201ENST00000605247 905 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AP000860.1-201ENST00000605250 559 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 AC246785.4-201ENST00000605374 287 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 MIR6748-201ENST00000610433 71 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 BX664608.1-201ENST00000610519 487 ntBASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
LIMCH1Q9UPQ0 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 RNU6-761P-201ENST00000384148 107 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 RWDD4P2-201ENST00000426392 563 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC112653.1-201ENST00000443851 386 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 PSPHP1-201ENST00000450062 261 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 MTND1P9-201ENST00000453775 944 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC146507.1-201ENST00000468335 354 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AL132838.2-201ENST00000492041 314 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 VWA8P1-201ENST00000510889 176 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 NPM1P41-201ENST00000512920 831 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC010493.1-201ENST00000513479 292 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AP003385.6-201ENST00000531603 374 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 YPEL5P3-201ENST00000547227 352 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 TPRKBP2-201ENST00000565969 475 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 ARF4P1-201ENST00000605447 541 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC091925.2-201ENST00000625059 256 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 OR5H6-203ENST00000642105 978 ntBASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.64□□□□□ -1.67
LIMCH1Q9UPQ0 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 MTND5P33-201ENST00000571250 1450 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC011460.1-201ENST00000636268 1834 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC009902.3-201ENST00000606235 2172 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 HMGN2P8-201ENST00000391458 268 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 GSTA9P-201ENST00000406231 611 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 RPL18P10-201ENST00000425606 538 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AL589872.1-201ENST00000426602 288 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms