Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL17A1Q9UMD9 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL17A1Q9UMD9 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 RNU6-297P-201ENST00000384636 107 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 RPL23AP47-201ENST00000408017 460 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 RNU6ATAC10P-201ENST00000408635 111 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AC245054.2-201ENST00000415639 319 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AC062016.2-201ENST00000420950 676 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 Y_RNA.632-201ENST00000459189 102 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 RPL30P9-201ENST00000465586 330 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AC010307.1-201ENST00000467206 836 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AC108078.1-201ENST00000508073 725 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AC008083.2-201ENST00000546707 476 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 NRBF2P5-201ENST00000603087 788 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AL713866.2-201ENST00000603579 219 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 U4.1-201ENST00000620349 87 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AC090617.10-201ENST00000624308 134 ntBASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL17A1Q9UMD9 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AC067945.1-201ENST00000342609 618 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 SNORD42.2-201ENST00000365570 69 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 Y_RNA.579-201ENST00000390939 94 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AL034374.1-201ENST00000406329 351 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AL603766.1-201ENST00000407763 664 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 MIR548M-201ENST00000408260 86 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 OFD1P1Y-201ENST00000411756 1225 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 MAP1LC3BP1-201ENST00000417653 379 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AC097713.2-201ENST00000430199 356 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AL451074.3-201ENST00000437709 472 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 RPL7P48-201ENST00000461513 746 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AP000797.1-201ENST00000478870 387 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 RPS3AP14-201ENST00000483907 780 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 DEFB109F-201ENST00000491870 277 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 SNORA19.2-201ENST00000516013 114 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 RNA5SP216-201ENST00000516111 123 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AC243972.3-201ENST00000539655 198 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AL161670.1-201ENST00000554348 137 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AL512360.1-201ENST00000555346 234 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 BNIP3P23-201ENST00000599655 511 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 XIAPP1-201ENST00000603162 600 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AL139286.1-201ENST00000604465 483 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AC090525.3-201ENST00000605601 189 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 AC023509.5-201ENST00000617434 807 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 RMST_7.1-201ENST00000621935 268 ntBASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL17A1Q9UMD9 SNORA62.2-201ENST00000364672 152 ntBASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 MIR217-201ENST00000384817 110 ntBASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 AL035423.1-201ENST00000420331 213 ntBASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 Z82205.1-201ENST00000428456 297 ntBASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 RPS24P13-201ENST00000442520 397 ntBASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 AL022238.1-201ENST00000442557 355 ntBASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 MRPL50P4-201ENST00000446432 475 ntBASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 RPL39P6-201ENST00000448289 150 ntBASIC6.15□□□□□ -1.42
COL17A1Q9UMD9 CACYBPP2-201ENST00000453625 678 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms