Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 RPL36AP33-201ENST00000450395 310 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 MEMO1P3-201ENST00000459811 302 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 RPL23AP14-201ENST00000468281 468 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 TMEM251P1-201ENST00000503717 318 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC006499.5-201ENST00000505037 514 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 RNU6-150P-201ENST00000516237 95 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 SNORA64.4-201ENST00000516632 81 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC060788.1-201ENST00000521318 469 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 MIR4276-201ENST00000584832 70 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC012557.2-201ENST00000605919 418 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AL031775.1-201ENST00000607014 887 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 FAM157B-203ENST00000639350 358 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 SRP72P2-201ENST00000344851 1979 ntBASIC3.52□□□□□ -1.85
SIX2Q9NPC8 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.52□□□□□ -1.85
SIX2Q9NPC8 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC004972.1-201ENST00000623934 2209 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 RNU1-33P-201ENST00000364249 162 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC019155.1-201ENST00000382242 574 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 SNORD116-4-201ENST00000384733 96 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC016769.3-201ENST00000396562 315 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 RNA5SP293-201ENST00000410527 113 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC063979.1-201ENST00000415539 377 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC083875.1-201ENST00000419509 405 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 RPS15AP40-201ENST00000419621 391 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 RPL7P30-201ENST00000420888 709 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 MTCO3P5-201ENST00000433620 714 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 RPL23AP22-201ENST00000437556 453 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AL117351.1-201ENST00000438864 766 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 TRIM60P18-201ENST00000441518 828 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 CDC27P1-201ENST00000445384 715 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 Z99127.3-201ENST00000448158 395 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC115115.1-201ENST00000449927 248 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AL136126.1-201ENST00000473603 402 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 RNF138P1-201ENST00000502765 546 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 APOOP4-201ENST00000513530 597 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 Y_RNA.695-201ENST00000516715 107 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 RN7SKP82-201ENST00000516786 223 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC022790.1-201ENST00000522872 204 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 CCNG2P1-201ENST00000549521 1000 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 HMGB3P26-201ENST00000560051 582 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 MIR2682-201ENST00000580305 110 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC103987.3-201ENST00000582071 292 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 U73023.1-201ENST00000603134 700 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 U3.45-201ENST00000607547 219 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 AL355365.1-201ENST00000616480 294 ntBASIC3.51□□□□□ -1.85
SIX2Q9NPC8 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.51□□□□□ -1.85
SIX2Q9NPC8 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
SIX2Q9NPC8 ASNSP1-201ENST00000518311 1939 ntBASIC3.5□□□□□ -1.85
SIX2Q9NPC8 AC074029.4-201ENST00000624796 1859 ntBASIC3.5□□□□□ -1.85
SIX2Q9NPC8 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
SIX2Q9NPC8 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.5□□□□□ -1.85
SIX2Q9NPC8 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
SIX2Q9NPC8 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
SIX2Q9NPC8 RNU6-623P-201ENST00000363143 105 ntBASIC3.5□□□□□ -1.85
SIX2Q9NPC8 U3.4-201ENST00000363352 213 ntBASIC3.5□□□□□ -1.85
SIX2Q9NPC8 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
SIX2Q9NPC8 PTMAP2-201ENST00000397627 327 ntBASIC3.5□□□□□ -1.85
SIX2Q9NPC8 DHFRP6-201ENST00000401776 268 ntBASIC3.5□□□□□ -1.85
SIX2Q9NPC8 AL024474.1-201ENST00000404655 591 ntBASIC3.5□□□□□ -1.85
SIX2Q9NPC8 MIR1183-201ENST00000408856 89 ntBASIC3.5□□□□□ -1.85
SIX2Q9NPC8 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.5□□□□□ -1.85
SIX2Q9NPC8 AL049610.1-201ENST00000423374 372 ntBASIC3.5□□□□□ -1.85
SIX2Q9NPC8 AL512649.1-201ENST00000428997 581 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms