Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 KCTD9P3-201ENST00000434597 1169 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 TXNP1-201ENST00000441872 371 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 UBE2D3P4-201ENST00000441973 436 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 BMI1P1-201ENST00000445879 941 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AC026726.1-201ENST00000512859 601 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 RNA5SP315-201ENST00000516340 116 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 RNA5SP312-201ENST00000517068 116 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 CCNG2P1-201ENST00000549521 1000 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AC109446.2-201ENST00000567872 497 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 ROCK1P1-201ENST00000573767 549 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 MIR4644-201ENST00000579929 84 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AC004223.2-201ENST00000590309 544 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AC092354.1-201ENST00000606057 376 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AC007038.2-201ENST00000608095 740 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AC008121.2-201ENST00000614647 523 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AL603758.1-201ENST00000618654 241 ntBASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HERPUD2Q9BSE4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 SNORA23-201ENST00000365128 182 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 SNORD116-8-201ENST00000384365 95 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 PPIAP31-201ENST00000405422 495 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 CCNG1P1-201ENST00000406783 885 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 UBE2FP1-201ENST00000416536 447 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AL356867.1-201ENST00000429623 299 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 GDI2P2-201ENST00000445131 608 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 HSFY6P-201ENST00000445573 403 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 SSXP4-201ENST00000451349 245 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 FTH1P2-201ENST00000466086 412 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 RPL31P60-201ENST00000478450 367 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 BTF3L4P4-201ENST00000506381 449 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 RNU6-1003P-201ENST00000517099 105 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC025881.1-201ENST00000518851 512 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 YPEL5P3-201ENST00000547227 352 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 RPL23AP84-201ENST00000571193 464 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC008568.2-201ENST00000623862 2313 ntBASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.12□□□□□ -1.75
HERPUD2Q9BSE4 AC090740.1-201ENST00000623193 2262 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 RNU1-13P-201ENST00000384499 162 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 RNU6-278P-201ENST00000390945 109 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 U3.42-201ENST00000408746 214 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AC018630.2-202ENST00000422992 927 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 OR5BE1P-201ENST00000425977 939 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 SNRPEP4-201ENST00000435815 279 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AC092473.1-201ENST00000441098 221 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AL049874.1-201ENST00000489560 388 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AC055855.1-201ENST00000489563 579 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 RPS15AP36-201ENST00000492022 382 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AC119751.5-201ENST00000514077 770 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AC087369.1-201ENST00000520775 996 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms