Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL359511.1-201ENST00000402970 211 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 AF274854.1-201ENST00000413236 615 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 AC008280.1-201ENST00000418851 412 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC2.55□□□□□ -2
CCDC42Q96M95 AC063976.3-201ENST00000426849 329 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 FCF1P1-201ENST00000432690 571 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
CCDC42Q96M95 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.55□□□□□ -2
CCDC42Q96M95 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.55□□□□□ -2
CCDC42Q96M95 AC046144.1-201ENST00000478559 1853 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 VN1R104P-201ENST00000505115 1009 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.55□□□□□ -2
CCDC42Q96M95 AC078814.3-201ENST00000553036 491 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 GTF3AP2-201ENST00000557014 266 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 AL035413.2-201ENST00000604801 525 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 AL161734.1-201ENST00000609720 557 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.55□□□□□ -2
CCDC42Q96M95 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC2.55□□□□□ -2
CCDC42Q96M95 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.54□□□□□ -2
CCDC42Q96M95 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC42Q96M95 AC005336.3-201ENST00000623833 2679 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 MIRLET7G-201ENST00000362280 84 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 SNORA67.1-201ENST00000364749 141 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 MIR128-1-201ENST00000384921 82 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC42Q96M95 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC2.54□□□□□ -2
CCDC42Q96M95 OFD1P11Y-201ENST00000418213 1177 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 AC019097.1-201ENST00000424783 735 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 ATP5F1P1-201ENST00000433775 569 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.54□□□□□ -2
CCDC42Q96M95 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.54□□□□□ -2
CCDC42Q96M95 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC42Q96M95 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.54□□□□□ -2
CCDC42Q96M95 AC026436.1-201ENST00000510537 270 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC2.54□□□□□ -2
CCDC42Q96M95 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 HAUS1P3-201ENST00000523909 662 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 AP000790.1-201ENST00000528891 737 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 SNRPGP16-201ENST00000533275 226 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.54□□□□□ -2
CCDC42Q96M95 GTF2IP8-201ENST00000560687 584 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.54□□□□□ -2
CCDC42Q96M95 AC025281.1-201ENST00000567026 265 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.54□□□□□ -2
CCDC42Q96M95 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.54□□□□□ -2
CCDC42Q96M95 AP001330.4-201ENST00000604350 154 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 AL161756.2-201ENST00000604597 246 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 AC018618.2-201ENST00000604770 446 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC2.54□□□□□ -2
CCDC42Q96M95 AC242628.1-201ENST00000606810 391 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.54□□□□□ -2
CCDC42Q96M95 MIR1291-201ENST00000627649 87 ntBASIC2.54□□□□□ -2
CCDC42Q96M95 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.54□□□□□ -2
CCDC42Q96M95 Z82209.1-201ENST00000422141 2135 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC42Q96M95 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC42Q96M95 AC135776.4-201ENST00000624300 1904 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 GNG5P1-201ENST00000255500 204 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC2.53□□□□□ -2
CCDC42Q96M95 MIR518C-201ENST00000384822 101 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 Z86062.1-201ENST00000406773 777 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 AL513477.1-202ENST00000417061 214 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC2.53□□□□□ -2
CCDC42Q96M95 AC068135.1-201ENST00000446164 246 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.53□□□□□ -2
CCDC42Q96M95 TRBV26-201ENST00000456572 344 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 LINC00888-204ENST00000487386 421 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC2.53□□□□□ -2
CCDC42Q96M95 NAMPTP2-201ENST00000505629 1115 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 AC108043.1-201ENST00000512696 574 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 AC026801.2-201ENST00000515352 425 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 RNU6-488P-201ENST00000515918 99 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 SNORA70.24-201ENST00000517233 118 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 IGLV3-17-201ENST00000519099 244 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 OR10V3P-201ENST00000525712 725 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 CASP1-212ENST00000531166 300 ntTSL 5 BASIC2.53□□□□□ -2
CCDC42Q96M95 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.53□□□□□ -2
CCDC42Q96M95 PRELID2P1-201ENST00000552837 301 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.53□□□□□ -2
CCDC42Q96M95 AC105137.2-201ENST00000569073 466 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC2.53□□□□□ -2
CCDC42Q96M95 U73023.1-201ENST00000603134 700 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 OR2AS2P-201ENST00000606902 342 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 MIR6798-201ENST00000612887 67 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 MIR6895-201ENST00000613497 78 ntBASIC2.53□□□□□ -2
CCDC42Q96M95 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.53□□□□□ -2
CCDC42Q96M95 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.53□□□□□ -2
CCDC42Q96M95 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC42Q96M95 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC42Q96M95 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.53□□□□□ -2
CCDC42Q96M95 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.53□□□□□ -2.01
CCDC42Q96M95 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC42Q96M95 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
CCDC42Q96M95 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC42Q96M95 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC42Q96M95 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC42Q96M95 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms