Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 COX7A2P2-201ENST00000505291 250 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 MTCO3P28-201ENST00000513351 515 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 RNA5SP216-201ENST00000516111 123 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 NDUFA5P2-201ENST00000519723 344 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC106038.2-201ENST00000520706 568 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC060788.1-201ENST00000521318 469 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC105233.3-201ENST00000531125 744 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC136618.2-201ENST00000575091 400 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 MIR544B-201ENST00000582372 78 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC104662.1-201ENST00000604448 511 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC116312.1-201ENST00000606841 314 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AL359715.5-201ENST00000623431 443 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC009093.8-201ENST00000641769 292 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 LINC00561-201ENST00000565815 2738 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AL136164.4-201ENST00000625013 2135 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AL365440.1-201ENST00000436135 2167 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC097714.1-201ENST00000511272 1647 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 MIR331-201ENST00000362302 94 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 RNA5SP124-201ENST00000362739 110 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AL356421.1-201ENST00000403255 413 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 RAB9AP3-201ENST00000412737 573 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 RPL23AP39-201ENST00000415533 405 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC245052.5-201ENST00000416320 649 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 MTCO3P12-201ENST00000416718 547 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 ISCA1P2-201ENST00000438679 421 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 RAB9AP1-201ENST00000449393 573 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 PDSS1P2-201ENST00000449397 678 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC007967.1-201ENST00000455422 1159 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 snoU13.8-201ENST00000458890 104 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 SETP11-201ENST00000473027 690 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AP001025.2-201ENST00000490908 477 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC006499.5-201ENST00000505037 514 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC093809.1-201ENST00000509155 340 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 KCTD9P2-201ENST00000512203 1013 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 RNA5SP468-201ENST00000516782 93 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 SNORA31.20-201ENST00000517111 133 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 OR5AP1P-201ENST00000529730 940 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AP004247.1-201ENST00000531556 1289 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 RN7SL600P-201ENST00000581811 299 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 MIR548AB-201ENST00000584917 84 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC020914.4-201ENST00000597690 277 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 PRELID3BP8-201ENST00000604148 295 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AL445264.1-201ENST00000621719 171 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 AC091965.5-201ENST00000624785 342 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 CRYM-AS1-204ENST00000637983 556 ntBASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PDLIM3Q53GG5 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PDLIM3Q53GG5 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms