Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SLC44A4Q53GD3 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
SLC44A4Q53GD3 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
SLC44A4Q53GD3 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.44□□□□□ -1.7
SLC44A4Q53GD3 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.44□□□□□ -1.7
SLC44A4Q53GD3 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RNA5SP258-201ENST00000362750 119 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RNA5SP175-201ENST00000364275 119 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 SNORD115-47-201ENST00000391226 86 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RPL17P50-201ENST00000396131 546 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AL583835.1-201ENST00000399570 407 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RPL21P65-201ENST00000406094 466 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 CCNG1P1-201ENST00000406783 885 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 SNORA11.1-201ENST00000408133 129 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RNU6-195P-201ENST00000411352 109 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC078974.1-201ENST00000411597 223 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RPS20P14-201ENST00000412545 360 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RPS12P23-201ENST00000419579 400 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 USP9YP18-201ENST00000425912 695 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 BX890604.2-201ENST00000427883 474 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RPEP2-201ENST00000432149 701 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AL590399.6-201ENST00000446396 307 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AL353691.1-201ENST00000451332 387 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RPL7L1P8-201ENST00000469911 741 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RPL9P6-201ENST00000492764 598 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 COX7A2P2-201ENST00000505291 250 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 SNORA18.6-201ENST00000516792 115 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 OR4R3P-201ENST00000525084 838 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC009101.1-201ENST00000568135 242 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 UBE2L4-201ENST00000587688 464 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 HMGN1P30-201ENST00000589286 268 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 RPL7P50-201ENST00000600588 727 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC004067.1-201ENST00000608733 700 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AL021997.2-201ENST00000615674 271 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AL356321.1-201ENST00000621360 228 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AL158801.5-201ENST00000623123 465 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AL139811.1-201ENST00000424779 2299 ntBASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SLC44A4Q53GD3 AC027290.2-201ENST00000623210 18662 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 NXPH1-205ENST00000602349 1953 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 RNU6-97P-201ENST00000363387 104 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 RNY4P34-201ENST00000364779 95 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 MIR3074-201ENST00000384885 81 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 Y_RNA.582-201ENST00000391023 95 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 RPL7P25-201ENST00000404151 721 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 RNU6ATAC-201ENST00000408749 126 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 RNA5SP56-201ENST00000410277 118 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 AL359704.1-201ENST00000411586 781 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 MTND6P13-201ENST00000443510 523 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 RPL29P29-201ENST00000448725 423 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 AC099563.1-201ENST00000456086 418 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 snoU109.1-201ENST00000459339 135 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 AL592156.1-201ENST00000508758 304 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 RNA5SP446-201ENST00000515955 82 ntBASIC4.42□□□□□ -1.7
SLC44A4Q53GD3 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms