Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL18A1P39060 MTND4P31-201ENST00000425607 1343 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
COL18A1P39060 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.72□□□□□ -1.97
COL18A1P39060 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.72□□□□□ -1.97
COL18A1P39060 ELOCP11-201ENST00000436690 332 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.72□□□□□ -1.97
COL18A1P39060 AC124916.1-201ENST00000444020 547 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 ELOCP16-201ENST00000444494 332 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.72□□□□□ -1.97
COL18A1P39060 HMGB3P30-201ENST00000457863 606 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 AC087385.1-201ENST00000475062 312 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 SNX5P1-201ENST00000505757 1041 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.72□□□□□ -1.97
COL18A1P39060 AL845331.3-202ENST00000562856 261 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 MIR3186-201ENST00000577404 85 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 AL359198.2-201ENST00000611836 194 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 AC244517.12-201ENST00000623581 663 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
COL18A1P39060 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
COL18A1P39060 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC2.72□□□□□ -1.97
COL18A1P39060 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL18A1P39060 RNU6-152P-201ENST00000384037 107 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 Y_RNA.466-201ENST00000384294 113 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 MIR9-3-201ENST00000385084 90 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 SAR1AP2-201ENST00000392696 594 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 AL512504.1-201ENST00000415494 778 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 AC007390.1-201ENST00000415722 356 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 AC008173.1-201ENST00000418901 264 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.72□□□□□ -1.97
COL18A1P39060 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.72□□□□□ -1.97
COL18A1P39060 POLR2KP1-201ENST00000553226 168 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.72□□□□□ -1.97
COL18A1P39060 ZNF92P3-201ENST00000596594 954 ntBASIC2.72□□□□□ -1.97
COL18A1P39060 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.71□□□□□ -1.98
COL18A1P39060 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
COL18A1P39060 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
COL18A1P39060 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL18A1P39060 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL18A1P39060 CCNB2P1-201ENST00000399411 1150 ntBASIC2.71□□□□□ -1.98
COL18A1P39060 AL450338.1-201ENST00000407987 512 ntBASIC2.71□□□□□ -1.98
COL18A1P39060 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.71□□□□□ -1.98
COL18A1P39060 AC009414.1-201ENST00000427200 443 ntBASIC2.71□□□□□ -1.98
COL18A1P39060 ELOCP6-201ENST00000429066 328 ntBASIC2.71□□□□□ -1.98
COL18A1P39060 ELOCP12-201ENST00000458706 328 ntBASIC2.71□□□□□ -1.98
COL18A1P39060 AC111193.1-201ENST00000504097 155 ntBASIC2.71□□□□□ -1.98
COL18A1P39060 MTATP6P22-201ENST00000507369 598 ntBASIC2.71□□□□□ -1.98
COL18A1P39060 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC2.71□□□□□ -1.98
COL18A1P39060 AC013562.2-201ENST00000611632 603 ntBASIC2.71□□□□□ -1.98
COL18A1P39060 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL18A1P39060 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
COL18A1P39060 AC005539.1-201ENST00000443768 1479 ntBASIC2.7□□□□□ -1.98
COL18A1P39060 RN7SKP226-201ENST00000364912 300 ntBASIC2.7□□□□□ -1.98
COL18A1P39060 RPL7P53-201ENST00000421245 739 ntBASIC2.7□□□□□ -1.98
COL18A1P39060 RPL21P103-201ENST00000479921 488 ntBASIC2.7□□□□□ -1.98
COL18A1P39060 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.7□□□□□ -1.98
COL18A1P39060 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.7□□□□□ -1.98
COL18A1P39060 OR5H4P-201ENST00000510851 923 ntBASIC2.7□□□□□ -1.98
COL18A1P39060 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
COL18A1P39060 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.7□□□□□ -1.98
COL18A1P39060 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.7□□□□□ -1.98
COL18A1P39060 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.7□□□□□ -1.98
COL18A1P39060 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.7□□□□□ -1.98
COL18A1P39060 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.7□□□□□ -1.98
COL18A1P39060 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.7□□□□□ -1.98
COL18A1P39060 AC073111.2-201ENST00000605657 1075 ntBASIC2.7□□□□□ -1.98
COL18A1P39060 AC110792.4-201ENST00000609843 298 ntBASIC2.7□□□□□ -1.98
COL18A1P39060 AL137847.3-201ENST00000611521 109 ntBASIC2.7□□□□□ -1.98
COL18A1P39060 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
COL18A1P39060 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.7□□□□□ -1.98
COL18A1P39060 AP005901.5-201ENST00000545779 1796 ntBASIC2.7□□□□□ -1.98
COL18A1P39060 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL18A1P39060 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL18A1P39060 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
COL18A1P39060 RNA5SP167-201ENST00000365461 116 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 RNU6-452P-201ENST00000384406 107 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 RNU6-328P-201ENST00000390887 106 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 RNU6-1140P-201ENST00000410517 106 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 AC005005.2-201ENST00000420779 380 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 AL009174.1-201ENST00000426577 416 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.69□□□□□ -1.98
COL18A1P39060 USP9YP7-201ENST00000436723 430 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 USP9YP32-201ENST00000452432 430 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 RPL30P11-201ENST00000495304 339 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 AC011611.5-201ENST00000552477 578 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 AL389895.1-201ENST00000554127 252 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.69□□□□□ -1.98
COL18A1P39060 AC120053.1-201ENST00000607706 736 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 AC091834.1-201ENST00000614543 472 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.69□□□□□ -1.98
COL18A1P39060 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL18A1P39060 ZNF33CP-201ENST00000432492 2030 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.69□□□□□ -1.98
COL18A1P39060 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL18A1P39060 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.69□□□□□ -1.98
COL18A1P39060 Y_RNA.269-201ENST00000364685 89 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 TPTE2P1-204ENST00000435256 593 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 AC233279.1-201ENST00000455300 423 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 AC091179.1-201ENST00000461606 579 ntBASIC2.69□□□□□ -1.98
COL18A1P39060 MTND3P6-201ENST00000485242 339 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms