Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HOXD3P31249 RPL21P103-201ENST00000479921 488 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXD3P31249 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD3P31249 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD3P31249 AC015795.1-201ENST00000513669 327 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD3P31249 MTCO1P35-201ENST00000515270 228 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 SNORA31.9-201ENST00000516429 84 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 SCARNA24.1-201ENST00000516465 137 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 Y_RNA.702-201ENST00000516843 96 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD3P31249 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXD3P31249 AL512310.1-201ENST00000548639 172 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXD3P31249 HIF1AP1-201ENST00000553642 175 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 KC877982.1-201ENST00000602313 470 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 AC007621.1-201ENST00000604544 437 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 AC002550.2-201ENST00000621246 394 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 AP005264.7-201ENST00000625003 745 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 MIR4496-201ENST00000635896 61 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD3P31249 EIF2AP4-201ENST00000424793 1781 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
HOXD3P31249 LDHAL6CP-202ENST00000550738 3224 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXD3P31249 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
HOXD3P31249 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXD3P31249 IQCB2P-201ENST00000401788 1633 ntBASIC3.52□□□□□ -1.85
HOXD3P31249 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
HOXD3P31249 AL133412.1-201ENST00000380194 2992 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD3P31249 ZNF33CP-201ENST00000432492 2030 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD3P31249 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HOXD3P31249 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD3P31249 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 RNU6-694P-201ENST00000364071 147 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 RNU11-4P-201ENST00000391149 133 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 RNU6-1158P-201ENST00000391167 107 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 SDHCP2-201ENST00000398565 501 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 RNU6-908P-201ENST00000410160 94 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 RNA5SP239-201ENST00000410218 129 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 RN7SKP263-201ENST00000411194 309 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD3P31249 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD3P31249 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD3P31249 OR4K11P-201ENST00000431829 904 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD3P31249 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD3P31249 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD3P31249 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD3P31249 MTCO3P18-201ENST00000440206 761 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 RPL23AP93-201ENST00000440847 484 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 BNIP3P2-201ENST00000441221 577 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 RPL21P89-201ENST00000444021 467 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 NANOGP10-201ENST00000453325 895 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 ISCUP1-201ENST00000454451 448 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 RPL7AP28-201ENST00000464513 571 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 HMGB1P25-201ENST00000468402 607 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD3P31249 RPL23AP41-201ENST00000484754 458 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AL139099.1-201ENST00000497398 403 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 RNU6-798P-201ENST00000516912 103 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD3P31249 AL133271.1-201ENST00000538229 291 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD3P31249 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.51□□□□□ -1.85
HOXD3P31249 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD3P31249 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXD3P31249 OR4T1P-201ENST00000554933 911 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXD3P31249 AC090616.5-202ENST00000582111 297 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 RN7SL435P-201ENST00000584418 282 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 BNIP3P9-201ENST00000603714 553 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXD3P31249 AC105429.2-201ENST00000610567 517 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AC023043.4-201ENST00000612081 449 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 MIR8069-1-201ENST00000616627 86 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AC104260.1-201ENST00000616660 539 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AC104985.2-201ENST00000620598 500 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXD3P31249 MIR8069-2-201ENST00000621412 86 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AC015871.5-202ENST00000623252 701 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 AC022140.2-201ENST00000623500 188 ntBASIC3.51□□□□□ -1.85
HOXD3P31249 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms