| MUC1 | P15941 | AP003973.1-201 | ENST00000604639 | 691 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | STARD13-AS-221 | ENST00000608197 | 604 nt | TSL 5 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AP000240.1-201 | ENST00000609910 | 452 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AL356130.2-201 | ENST00000612554 | 404 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | MIR4509-1-201 | ENST00000618224 | 94 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC010975.3-201 | ENST00000618727 | 978 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | THOC1-220 | ENST00000621904 | 1083 nt | TSL 5 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | AC090772.4-201 | ENST00000623599 | 362 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | ZNF663P-202 | ENST00000641770 | 1131 nt | BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | PRKAA2-201 | ENST00000371244 | 9347 nt | APPRIS P2 TSL 1 (best) BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | MBNL3-205 | ENST00000370857 | 8760 nt | TSL 5 BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | VSTM2A-OT1-201 | ENST00000456049 | 3031 nt | TSL 1 (best) BASIC | 2.55 | □□□□□ -2 | | |
| MUC1 | P15941 | LRRC70-201 | ENST00000334994 | 2249 nt | APPRIS P1 TSL 1 (best) BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | SOBP-204 | ENST00000618129 | 1550 nt | TSL 1 (best) BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | CCDC178-213 | ENST00000583930 | 3094 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AC106754.1-201 | ENST00000562632 | 1513 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | ZNF29P-201 | ENST00000225587 | 168 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | MIR422A-201 | ENST00000362286 | 90 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | RNU6-600P-201 | ENST00000362524 | 99 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | RNA5SP374-201 | ENST00000362939 | 125 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | SNORA70.4-201 | ENST00000365509 | 134 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | KLRC2-201 | ENST00000381901 | 1211 nt | APPRIS ALT2 TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | RNU6-1226P-201 | ENST00000384317 | 107 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | RNU6-921P-201 | ENST00000384361 | 107 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | SNORD116-12-201 | ENST00000384468 | 92 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AL138885.1-201 | ENST00000405921 | 675 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | MEIG1-202 | ENST00000407572 | 625 nt | APPRIS P1 TSL 2 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | RNA5SP129-201 | ENST00000410276 | 118 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | MTCO2P8-201 | ENST00000412213 | 658 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | RPS3AP9-201 | ENST00000417027 | 792 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | BOLA3P4-201 | ENST00000418151 | 400 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | BLOC1S2P1-201 | ENST00000428431 | 301 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | ENOX1-AS2-201 | ENST00000434273 | 609 nt | TSL 3 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AC068533.3-201 | ENST00000435524 | 404 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | MUPP-201 | ENST00000438111 | 566 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AC093155.1-201 | ENST00000440164 | 826 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AL442647.1-201 | ENST00000449485 | 481 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | NDUFA5P7-201 | ENST00000452914 | 242 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | RPL21P41-201 | ENST00000459863 | 264 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AP001992.1-205 | ENST00000462248 | 379 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AC020651.1-201 | ENST00000490324 | 360 nt | TSL 3 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | OR2A20P-203 | ENST00000498397 | 1268 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | GTF2IP9-201 | ENST00000502460 | 301 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AC092673.1-201 | ENST00000510203 | 428 nt | TSL 3 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AC096734.1-201 | ENST00000511279 | 1128 nt | TSL 1 (best) BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | HIGD1AP3-201 | ENST00000515857 | 278 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | SNORA70.24-201 | ENST00000517233 | 118 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AP001318.2-201 | ENST00000533378 | 492 nt | TSL 3 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | LINC02490-201 | ENST00000559915 | 601 nt | TSL 3 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AL049838.1-201 | ENST00000563647 | 981 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | MTND3P13-201 | ENST00000574391 | 343 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AC090506.1-201 | ENST00000583089 | 572 nt | TSL 4 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AC004542.1-201 | ENST00000602955 | 264 nt | TSL 3 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AL355376.2-201 | ENST00000603866 | 267 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | BNIP3P11-201 | ENST00000603878 | 563 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | RNU4-5P-201 | ENST00000607255 | 135 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | IL33-205 | ENST00000611532 | 757 nt | TSL 1 (best) BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | OR5H6-201 | ENST00000615035 | 1113 nt | APPRIS P1 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AL121895.2-201 | ENST00000619558 | 447 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | CNBD1-207 | ENST00000620844 | 876 nt | APPRIS ALT2 TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AL590227.1-201 | ENST00000622616 | 315 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AL157770.1-201 | ENST00000623049 | 439 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | SATB1-AS1-266 | ENST00000630271 | 813 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | PPP2R2A-224 | ENST00000640787 | 318 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | OR5H6-202 | ENST00000641416 | 1032 nt | APPRIS P1 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | ZNF732-202 | ENST00000619749 | 2179 nt | APPRIS ALT2 TSL 2 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AL355596.1-201 | ENST00000565399 | 3996 nt | BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AC073130.1-201 | ENST00000457033 | 1958 nt | TSL 2 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AC108750.1-201 | ENST00000637986 | 2706 nt | APPRIS P1 TSL 4 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | IKZF2-213 | ENST00000457361 | 9350 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| MUC1 | P15941 | AKAP9-202 | ENST00000358100 | 10309 nt | TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | AC000403.1-201 | ENST00000613696 | 3585 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | ADAM18-206 | ENST00000520772 | 1429 nt | TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | AL035425.3-201 | ENST00000564206 | 4996 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | HMGB1P5-201 | ENST00000255320 | 642 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | RNU6-115P-201 | ENST00000364310 | 107 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | snoZ40.1-201 | ENST00000364540 | 72 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | CUBN-201 | ENST00000377823 | 705 nt | TSL 3 BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | SNORD65.1-201 | ENST00000390889 | 71 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | EIF5P1-201 | ENST00000400019 | 1231 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | AC005104.1-201 | ENST00000414896 | 442 nt | TSL 3 BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | AL391839.1-201 | ENST00000417447 | 265 nt | TSL 2 BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | AC106883.1-201 | ENST00000418805 | 562 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | LANCL1-AS1-202 | ENST00000420418 | 476 nt | TSL 3 BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | USP9YP36-201 | ENST00000424581 | 829 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | OR51AB1P-201 | ENST00000429046 | 620 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | AC114973.1-201 | ENST00000429057 | 632 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | MTCO1P3-201 | ENST00000429327 | 192 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | AC005345.1-201 | ENST00000431868 | 217 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | SPINK8-201 | ENST00000434006 | 444 nt | APPRIS P1 TSL 3 BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | AL589935.1-218 | ENST00000434683 | 529 nt | TSL 3 BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | NANOGP2-201 | ENST00000435391 | 727 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | RPL17P49-201 | ENST00000443728 | 411 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | RPS26P56-201 | ENST00000444468 | 240 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | GYG2-AS1-201 | ENST00000445107 | 515 nt | TSL 5 BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | AC099342.1-201 | ENST00000446399 | 1124 nt | TSL 3 BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | AC112492.1-201 | ENST00000449607 | 712 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | NDUFA6-201 | ENST00000470753 | 475 nt | TSL 2 BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | RPS27AP9-201 | ENST00000477681 | 438 nt | BASIC | 2.53 | □□□□□ -2 | | |
| MUC1 | P15941 | RN7SL20P-201 | ENST00000488827 | 297 nt | BASIC | 2.53 | □□□□□ -2 | | |