Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.28□□□□□ -2.04
CPSF4O95639 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF4O95639 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC2.28□□□□□ -2.04
CPSF4O95639 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
CPSF4O95639 HMGB1P1-201ENST00000522557 636 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
CPSF4O95639 AL136520.1-202ENST00000555494 763 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF4O95639 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF4O95639 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF4O95639 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.28□□□□□ -2.04
CPSF4O95639 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF4O95639 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF4O95639 BPTFP1-201ENST00000579209 492 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 MIR3200-201ENST00000580767 85 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 AC022069.1-201ENST00000582910 658 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC2.28□□□□□ -2.04
CPSF4O95639 AC010620.2-201ENST00000600135 313 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 AL161756.2-201ENST00000604597 246 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 AL033523.1-201ENST00000605153 153 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF4O95639 AP005229.2-201ENST00000609980 697 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 MIR7106-201ENST00000612419 65 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
CPSF4O95639 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.28□□□□□ -2.04
CPSF4O95639 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
CPSF4O95639 U4.3-201ENST00000621047 82 ntBASIC2.28□□□□□ -2.04
CPSF4O95639 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.28□□□□□ -2.04
CPSF4O95639 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.04
CPSF4O95639 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
CPSF4O95639 AC010733.2-201ENST00000589496 5702 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.27□□□□□ -2.05
CPSF4O95639 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CPSF4O95639 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CPSF4O95639 ZNF37BP-203ENST00000452306 1352 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 MTND4P34-201ENST00000572715 1371 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
CPSF4O95639 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.27□□□□□ -2.05
CPSF4O95639 RNU6-374P-201ENST00000364146 108 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 RNU6-353P-201ENST00000364266 108 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 SNORD114-30-201ENST00000364448 72 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 RNU6-335P-201ENST00000364563 113 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 U6.112-201ENST00000384129 70 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
CPSF4O95639 SSXP10-201ENST00000402595 565 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF4O95639 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF4O95639 MTCYBP24-201ENST00000420387 1106 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF4O95639 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC2.27□□□□□ -2.05
CPSF4O95639 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.27□□□□□ -2.05
CPSF4O95639 AL512637.2-201ENST00000431287 1256 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF4O95639 AC002542.1-201ENST00000440683 193 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF4O95639 AL050341.1-201ENST00000447743 313 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 RPL7P52-201ENST00000449200 742 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 NECAP1P2-201ENST00000455668 727 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 HMGB1P38-201ENST00000490557 577 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 RNF138P1-201ENST00000502765 546 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AC097462.2-201ENST00000504623 481 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 VN1R104P-201ENST00000505115 1009 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AC011352.3-201ENST00000505162 593 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC2.27□□□□□ -2.05
CPSF4O95639 AC104057.1-201ENST00000515547 497 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AC092470.1-201ENST00000546187 132 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC2.27□□□□□ -2.05
CPSF4O95639 AC093510.2-201ENST00000562820 896 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.27□□□□□ -2.05
CPSF4O95639 MIR4319-201ENST00000577285 85 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.27□□□□□ -2.05
CPSF4O95639 TPMTP1-201ENST00000592307 737 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AP002906.1-201ENST00000603405 233 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AC013468.1-201ENST00000608680 598 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 AC006023.2-201ENST00000609916 167 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC2.27□□□□□ -2.05
CPSF4O95639 AL121594.5-201ENST00000631724 573 ntBASIC2.27□□□□□ -2.05
CPSF4O95639 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
CPSF4O95639 SGO1P1-201ENST00000603525 1447 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 MTND5P31-201ENST00000419366 1374 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CPSF4O95639 RPL21P132-201ENST00000331267 462 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC2.26□□□□□ -2.05
CPSF4O95639 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.26□□□□□ -2.05
CPSF4O95639 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC2.26□□□□□ -2.05
CPSF4O95639 MIR16-1-201ENST00000385271 89 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 SAR1AP2-201ENST00000392696 594 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 SFR1P1-201ENST00000403720 688 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 MIR1250-201ENST00000408098 113 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC2.26□□□□□ -2.05
CPSF4O95639 RPL21P66-201ENST00000426566 466 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 FCF1P1-201ENST00000432690 571 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC2.26□□□□□ -2.05
CPSF4O95639 HMGN2P20-201ENST00000437531 273 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CPSF4O95639 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC2.26□□□□□ -2.05
CPSF4O95639 Z99714.1-201ENST00000450463 807 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2.26□□□□□ -2.05
CPSF4O95639 RPL21P8-201ENST00000465083 535 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms