Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC103783.1-201ENST00000520506 373 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC021006.3-201ENST00000530771 192 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC135001.1-201ENST00000544546 283 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 RAB11AP2-201ENST00000545905 639 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 HMGB2P1-201ENST00000591146 634 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC010680.3-201ENST00000604215 520 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC013553.2-201ENST00000604244 589 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AL391358.1-201ENST00000605342 190 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC133644.2-201ENST00000608142 540 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC006329.2-201ENST00000611491 394 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 RMST_9.1-201ENST00000619945 193 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC018445.2-201ENST00000622987 260 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC005086.4-201ENST00000623065 213 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC024614.3-201ENST00000637860 256 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 AC116667.1-201ENST00000604855 2072 ntBASIC4.17□□□□□ -1.74
VSX1Q9NZR4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
VSX1Q9NZR4 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 SNORA74A-201ENST00000364089 198 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 RNU6-767P-201ENST00000384132 107 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 RNU6-754P-201ENST00000391166 107 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 CYB5AP4-201ENST00000396692 399 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 OR9R1P-201ENST00000412200 877 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 RAC1P3-201ENST00000416129 580 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC092832.1-201ENST00000422934 400 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC007283.2-201ENST00000424739 197 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 RPL36AP6-201ENST00000435770 321 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 FTH1P1-201ENST00000437933 532 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 H2AFZP5-201ENST00000446960 382 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC010469.1-201ENST00000463864 576 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC053481.1-201ENST00000467217 306 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC004453.1-201ENST00000487895 408 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 RPL38P4-201ENST00000502376 214 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 NDUFA5P12-201ENST00000503796 343 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC008638.1-201ENST00000506035 866 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 SNORD27.1-201ENST00000516319 72 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC007424.1-203ENST00000554613 687 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 RPL21P7-201ENST00000557463 483 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 ATP5J2P6-201ENST00000565203 266 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC018638.8-201ENST00000588755 281 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 GLUD1P4-201ENST00000590914 418 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC128687.2-201ENST00000609657 566 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC022140.2-201ENST00000623500 188 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AC112204.3-201ENST00000623822 332 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 AP000843.1-201ENST00000624880 701 ntBASIC4.16□□□□□ -1.74
VSX1Q9NZR4 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
VSX1Q9NZR4 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
VSX1Q9NZR4 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
VSX1Q9NZR4 EOGT-210ENST00000615922 1931 ntBASIC4.15□□□□□ -1.74
VSX1Q9NZR4 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.15□□□□□ -1.74
VSX1Q9NZR4 MTND5P17-201ENST00000418405 1603 ntBASIC4.15□□□□□ -1.74
VSX1Q9NZR4 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
VSX1Q9NZR4 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
VSX1Q9NZR4 RN7SKP44-201ENST00000363602 316 ntBASIC4.15□□□□□ -1.75
VSX1Q9NZR4 Y_RNA.255-201ENST00000364581 97 ntBASIC4.15□□□□□ -1.75
VSX1Q9NZR4 SNORA70E-201ENST00000384492 135 ntBASIC4.15□□□□□ -1.75
VSX1Q9NZR4 MIR558-201ENST00000384920 94 ntBASIC4.15□□□□□ -1.75
VSX1Q9NZR4 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.15□□□□□ -1.75
VSX1Q9NZR4 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.15□□□□□ -1.75
VSX1Q9NZR4 RNA5SP146-201ENST00000410743 123 ntBASIC4.15□□□□□ -1.75
VSX1Q9NZR4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.15□□□□□ -1.75
VSX1Q9NZR4 AC127526.1-201ENST00000417526 366 ntBASIC4.15□□□□□ -1.75
VSX1Q9NZR4 ATP5JP1-201ENST00000431631 322 ntBASIC4.15□□□□□ -1.75
VSX1Q9NZR4 NRBF2P3-201ENST00000432731 865 ntBASIC4.15□□□□□ -1.75
VSX1Q9NZR4 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms