Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC087477.6-201ENST00000559595 843 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AC060771.1-201ENST00000582031 164 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 UBE2L4-201ENST00000587688 464 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 NRBF2P5-201ENST00000603087 788 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 MIR6798-201ENST00000612887 67 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 RMST_9.1-201ENST00000619945 193 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AL158801.5-201ENST00000623123 465 ntBASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CLIP3Q96DZ5 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 RNU6-335P-201ENST00000364563 113 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 RNU11-4P-201ENST00000391149 133 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AL603766.1-201ENST00000407763 664 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 RSU1P3-201ENST00000412878 835 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC114755.2-201ENST00000413520 361 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 COX5BP7-201ENST00000414780 274 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 SNRPEP10-201ENST00000420249 274 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC099677.1-201ENST00000420575 175 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AL353193.1-201ENST00000421444 268 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 NRBF2P3-201ENST00000432731 865 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 USP9YP7-201ENST00000436723 430 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC114495.1-201ENST00000441274 436 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 USP9YP15-201ENST00000442391 422 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 USP9YP32-201ENST00000452432 430 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 C1DP4-201ENST00000455429 424 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 RPS29P33-201ENST00000456717 146 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 HMGB3P30-201ENST00000457863 606 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC010469.1-201ENST00000463864 576 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 RPL35P6-201ENST00000490024 372 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC021146.3-201ENST00000511911 260 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 ENPP7P9-201ENST00000514456 627 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 RNU6-327P-201ENST00000516270 127 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 RNU6-1045P-201ENST00000516321 107 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AP004371.1-201ENST00000525240 214 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AP003034.1-201ENST00000534621 422 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AP006289.1-201ENST00000538089 277 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 HIF1AP1-201ENST00000553642 175 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 PSMA3P-201ENST00000555485 635 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC079075.1-201ENST00000559543 878 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC012182.1-201ENST00000570133 895 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC005255.1-201ENST00000593748 216 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 SNRPGP15-201ENST00000600149 222 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 KC877982.1-201ENST00000602313 470 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC006254.3-201ENST00000603353 884 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 FAM27B-201ENST00000610601 213 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 RMST_3.1-201ENST00000611651 109 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 CR381572.2-201ENST00000624852 397 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 AC110994.2-201ENST00000635481 492 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 MTND5P42-201ENST00000637720 498 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.63□□□□□ -1.67
CLIP3Q96DZ5 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.58-201ENST00000362807 102 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.138-201ENST00000363462 102 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 Y_RNA.154-201ENST00000363624 102 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 RNVU1-6-201ENST00000364688 164 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 RNY4P34-201ENST00000364779 95 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 RNY3P1-201ENST00000365085 102 ntBASIC4.62□□□□□ -1.67
CLIP3Q96DZ5 RNY3-201ENST00000365484 102 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms