Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.68□□□□□ -1.98
USP54Q70EL1 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.68□□□□□ -1.98
USP54Q70EL1 AP005901.5-201ENST00000545779 1796 ntBASIC2.67□□□□□ -1.98
USP54Q70EL1 RN7SKP226-201ENST00000364912 300 ntBASIC2.67□□□□□ -1.98
USP54Q70EL1 MIR92A2-201ENST00000385299 75 ntBASIC2.67□□□□□ -1.98
USP54Q70EL1 SETP8-201ENST00000435341 628 ntBASIC2.67□□□□□ -1.98
USP54Q70EL1 RNU6-1218P-201ENST00000458990 108 ntBASIC2.67□□□□□ -1.98
USP54Q70EL1 AP002371.1-201ENST00000463604 433 ntBASIC2.67□□□□□ -1.98
USP54Q70EL1 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
USP54Q70EL1 RNA5SP445-201ENST00000515889 115 ntBASIC2.67□□□□□ -1.98
USP54Q70EL1 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.67□□□□□ -1.98
USP54Q70EL1 VN1R81P-201ENST00000602085 372 ntBASIC2.67□□□□□ -1.98
USP54Q70EL1 MTCO1P14-201ENST00000441695 1559 ntBASIC2.67□□□□□ -1.98
USP54Q70EL1 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
USP54Q70EL1 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
USP54Q70EL1 LUZP4P1-201ENST00000415420 344 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 ATP5F1P1-201ENST00000433775 569 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC2.66□□□□□ -1.98
USP54Q70EL1 VN1R80P-201ENST00000597126 338 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 RPAP2P1-201ENST00000603626 1168 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
USP54Q70EL1 AC244517.1-201ENST00000606030 2086 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.66□□□□□ -1.98
USP54Q70EL1 Y_RNA.508-201ENST00000384502 114 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 RNU6-1140P-201ENST00000410517 106 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 MTCO3P30-201ENST00000426425 670 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC2.66□□□□□ -1.98
USP54Q70EL1 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC2.66□□□□□ -1.98
USP54Q70EL1 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.66□□□□□ -1.98
USP54Q70EL1 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.66□□□□□ -1.98
USP54Q70EL1 AC007182.2-201ENST00000489251 402 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.66□□□□□ -1.98
USP54Q70EL1 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.66□□□□□ -1.98
USP54Q70EL1 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.66□□□□□ -1.98
USP54Q70EL1 AC145207.9-201ENST00000623802 325 ntBASIC2.66□□□□□ -1.98
USP54Q70EL1 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
USP54Q70EL1 API5P2-201ENST00000397055 1498 ntBASIC2.65□□□□□ -1.98
USP54Q70EL1 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
USP54Q70EL1 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC2.65□□□□□ -1.99
USP54Q70EL1 HMGB3P30-201ENST00000457863 606 ntBASIC2.65□□□□□ -1.99
USP54Q70EL1 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.65□□□□□ -1.99
USP54Q70EL1 AC011611.5-201ENST00000552477 578 ntBASIC2.65□□□□□ -1.99
USP54Q70EL1 AC034268.2-201ENST00000571784 482 ntBASIC2.65□□□□□ -1.99
USP54Q70EL1 AP004372.1-201ENST00000604842 844 ntBASIC2.65□□□□□ -1.99
USP54Q70EL1 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.65□□□□□ -1.99
USP54Q70EL1 C2orf27A-204ENST00000623058 969 ntBASIC2.65□□□□□ -1.99
USP54Q70EL1 AC004943.3-201ENST00000624116 600 ntBASIC2.65□□□□□ -1.99
USP54Q70EL1 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
USP54Q70EL1 AC110792.3-201ENST00000595906 1614 ntBASIC2.65□□□□□ -1.99
USP54Q70EL1 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
USP54Q70EL1 RNU6-457P-201ENST00000363999 107 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.64□□□□□ -1.99
USP54Q70EL1 AF274854.1-201ENST00000413236 615 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.64□□□□□ -1.99
USP54Q70EL1 AL591719.1-201ENST00000444669 744 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC2.64□□□□□ -1.99
USP54Q70EL1 AP000852.1-201ENST00000472460 573 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 AC104435.1-201ENST00000483483 166 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 GZMAP1-201ENST00000503054 631 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.64□□□□□ -1.99
USP54Q70EL1 RNU6-1053P-201ENST00000515930 101 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.64□□□□□ -1.99
USP54Q70EL1 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 OR4T1P-201ENST00000554933 911 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 AC083899.3-201ENST00000603413 594 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 AP000787.2-201ENST00000604432 568 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 AC034236.3-201ENST00000605999 461 ntBASIC2.64□□□□□ -1.99
USP54Q70EL1 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
USP54Q70EL1 RPS26P30-201ENST00000443431 335 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 AC010683.1-201ENST00000473673 378 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.63□□□□□ -1.99
USP54Q70EL1 AC025881.1-201ENST00000518851 512 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 AL161713.1-201ENST00000555538 145 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 OR4K7P-201ENST00000580232 945 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 AC007620.3-201ENST00000608131 497 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 AC108479.2-201ENST00000617314 601 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 AL133370.2-201ENST00000619934 439 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
USP54Q70EL1 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
USP54Q70EL1 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
USP54Q70EL1 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
USP54Q70EL1 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
USP54Q70EL1 Y_RNA.40-201ENST00000362645 93 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 MIR583-201ENST00000384846 75 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.63□□□□□ -1.99
USP54Q70EL1 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.63□□□□□ -1.99
USP54Q70EL1 TTC39CP1-201ENST00000512513 755 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.63□□□□□ -1.99
USP54Q70EL1 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.63□□□□□ -1.99
USP54Q70EL1 AL356575.1-201ENST00000603008 283 ntBASIC2.63□□□□□ -1.99
USP54Q70EL1 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC2.63□□□□□ -1.99
USP54Q70EL1 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC2.63□□□□□ -1.99
USP54Q70EL1 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
USP54Q70EL1 AC000367.1-201ENST00000452711 1766 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
USP54Q70EL1 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
USP54Q70EL1 DCAF13P1-201ENST00000495256 1330 ntBASIC2.62□□□□□ -1.99
USP54Q70EL1 AC005539.1-201ENST00000443768 1479 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms