Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AL022099.1-201ENST00000604551 712 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 RPL23AP88-201ENST00000605759 454 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 Y_RNA.783-201ENST00000613546 102 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 SCARNA17.4-201ENST00000614296 143 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 AC092159.4-201ENST00000624944 550 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.71□□□□□ -2.14
USF3Q68DE3 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC1.71□□□□□ -2.14
USF3Q68DE3 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.71□□□□□ -2.14
USF3Q68DE3 RNU4-62P-201ENST00000410125 130 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 RNU6-1140P-201ENST00000410517 106 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 TRAPPC2P10-201ENST00000415662 323 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 AL353729.1-201ENST00000425044 720 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 AC109583.1-201ENST00000432156 268 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.71□□□□□ -2.14
USF3Q68DE3 AL353093.1-201ENST00000441292 436 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.71□□□□□ -2.14
USF3Q68DE3 RPL23AP20-201ENST00000447965 421 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 PRELID2P1-201ENST00000552837 301 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC1.71□□□□□ -2.14
USF3Q68DE3 AC009570.1-201ENST00000609599 745 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 MIR6132-201ENST00000622083 109 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 AC009452.1-201ENST00000640823 606 ntBASIC1.71□□□□□ -2.14
USF3Q68DE3 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
USF3Q68DE3 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
USF3Q68DE3 RNU6-457P-201ENST00000363999 107 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 RNU6-146P-201ENST00000384602 108 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 MIR9-3-201ENST00000385084 90 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AC106901.1-201ENST00000425086 698 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC1.7□□□□□ -2.14
USF3Q68DE3 SDR42E1P3-201ENST00000438345 502 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 TAF9P1-201ENST00000445421 515 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 TAF9P2-201ENST00000454958 515 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AC007182.2-201ENST00000489251 402 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AC090255.1-201ENST00000495779 349 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 RNU1-40P-201ENST00000516816 164 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 RNU1-97P-201ENST00000516872 164 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.7□□□□□ -2.14
USF3Q68DE3 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.7□□□□□ -2.14
USF3Q68DE3 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC1.7□□□□□ -2.14
USF3Q68DE3 AC092650.2-201ENST00000619984 902 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AP005901.5-201ENST00000545779 1796 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.7□□□□□ -2.14
USF3Q68DE3 CNOT6LP1-201ENST00000559681 1462 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 Y_RNA.508-201ENST00000384502 114 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AC005005.2-201ENST00000420779 380 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AC027124.2-201ENST00000428249 105 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AC233279.1-201ENST00000455300 423 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 RPS26P21-201ENST00000475397 348 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AC017007.3-201ENST00000479865 435 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC1.7□□□□□ -2.14
USF3Q68DE3 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC1.7□□□□□ -2.14
USF3Q68DE3 AC092954.1-201ENST00000609121 445 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 AC244517.12-201ENST00000623581 663 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 MTND4P35-201ENST00000604257 1375 ntBASIC1.7□□□□□ -2.14
USF3Q68DE3 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
USF3Q68DE3 AL118496.1-201ENST00000440201 1812 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 RLIMP2-201ENST00000427891 1563 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
USF3Q68DE3 RNY1P10-201ENST00000363268 113 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 MIR518E-201ENST00000385252 88 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 NCSTNP1-201ENST00000406229 144 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 LUZP4P1-201ENST00000415420 344 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC1.69□□□□□ -2.14
USF3Q68DE3 AC079804.2-201ENST00000490376 200 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 C1GALT1P2-201ENST00000510813 1104 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC1.69□□□□□ -2.14
USF3Q68DE3 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC1.69□□□□□ -2.14
USF3Q68DE3 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.69□□□□□ -2.14
USF3Q68DE3 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.6-201ENST00000603753 252 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.11-201ENST00000604059 253 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.10-201ENST00000604330 253 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AC008162.1-201ENST00000604718 254 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.1-201ENST00000604752 252 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.2-201ENST00000604983 252 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.5-201ENST00000605253 252 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.4-201ENST00000605279 254 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.12-201ENST00000605291 253 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.8-201ENST00000605353 252 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.9-201ENST00000605428 253 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AL670379.7-201ENST00000605823 252 ntBASIC1.69□□□□□ -2.14
USF3Q68DE3 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC1.69□□□□□ -2.14
USF3Q68DE3 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
USF3Q68DE3 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
USF3Q68DE3 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
USF3Q68DE3 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
USF3Q68DE3 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
USF3Q68DE3 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
USF3Q68DE3 RNA5SP160-201ENST00000364866 120 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC1.68□□□□□ -2.14
USF3Q68DE3 HSPE1P28-201ENST00000443139 211 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 AC009237.8-201ENST00000445492 379 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 AL157827.1-201ENST00000447622 132 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 RNU6-717P-201ENST00000459076 104 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC1.68□□□□□ -2.14
USF3Q68DE3 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC1.68□□□□□ -2.14
USF3Q68DE3 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC1.68□□□□□ -2.14
USF3Q68DE3 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.68□□□□□ -2.14
USF3Q68DE3 AC099336.2-201ENST00000422457 254 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms