Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.9□□□□□ -1.95
COL4A4P53420 MTCO3P7-201ENST00000510008 774 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.9□□□□□ -1.95
COL4A4P53420 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC2.9□□□□□ -1.95
COL4A4P53420 RNA5SP282-201ENST00000516355 108 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 RNU6-548P-201ENST00000517083 115 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 SNORA76.2-201ENST00000517095 137 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.9□□□□□ -1.95
COL4A4P53420 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.9□□□□□ -1.95
COL4A4P53420 AC107304.1-201ENST00000604229 296 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AP002802.2-201ENST00000605877 235 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AC067838.1-201ENST00000606064 577 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AL583856.2-201ENST00000606298 543 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL4A4P53420 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.9□□□□□ -1.95
COL4A4P53420 AP003499.2-201ENST00000624100 483 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AC017037.3-201ENST00000625016 472 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 ZNF72P-201ENST00000425869 1908 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AC080128.1-201ENST00000474389 1917 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
COL4A4P53420 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL4A4P53420 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
COL4A4P53420 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.9□□□□□ -1.95
COL4A4P53420 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
COL4A4P53420 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL4A4P53420 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL4A4P53420 RNU6-1214P-201ENST00000363650 109 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 MIR137-201ENST00000385223 102 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AL355615.1-201ENST00000406187 641 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 SNORA3.2-201ENST00000408221 125 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 RNU4-27P-201ENST00000410889 139 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.89□□□□□ -1.95
COL4A4P53420 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.89□□□□□ -1.95
COL4A4P53420 DLGAP5P1-201ENST00000430307 464 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AL139415.2-201ENST00000431968 163 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 HMGN2P3-201ENST00000433603 273 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 HMGN2P5-201ENST00000436882 273 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AL513321.1-201ENST00000441175 761 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.89□□□□□ -1.95
COL4A4P53420 MTCO2P18-201ENST00000457151 658 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AC011037.1-201ENST00000483964 558 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 MTCO3P35-201ENST00000485582 781 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AC078817.1-201ENST00000492623 435 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AC108157.1-201ENST00000510511 539 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AC010625.1-201ENST00000511296 403 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 SNORA3.4-201ENST00000515969 96 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 RNA5SP76-201ENST00000516277 87 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AC103833.1-201ENST00000517442 172 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC2.89□□□□□ -1.95
COL4A4P53420 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC2.89□□□□□ -1.95
COL4A4P53420 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL4A4P53420 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.89□□□□□ -1.95
COL4A4P53420 AP000857.1-201ENST00000532151 543 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AC243972.3-201ENST00000539655 198 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL4A4P53420 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.89□□□□□ -1.95
COL4A4P53420 AC009094.1-201ENST00000564443 426 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AC010735.1-201ENST00000567305 1026 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.89□□□□□ -1.95
COL4A4P53420 AC004775.1-201ENST00000607389 753 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 AC004241.3-201ENST00000611728 517 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 MIR8084-201ENST00000614105 89 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
COL4A4P53420 AC123767.1-202ENST00000620407 817 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.89□□□□□ -1.95
COL4A4P53420 CR381653.2-201ENST00000624041 768 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL4A4P53420 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL4A4P53420 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.89□□□□□ -1.95
COL4A4P53420 AC095050.2-201ENST00000510748 1458 ntBASIC2.89□□□□□ -1.95
COL4A4P53420 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.89□□□□□ -1.95
COL4A4P53420 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL4A4P53420 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL4A4P53420 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL4A4P53420 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL4A4P53420 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
COL4A4P53420 Y_RNA.164-201ENST00000363709 102 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.88□□□□□ -1.95
COL4A4P53420 HMGB1P13-201ENST00000406019 642 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 ATF1P1-201ENST00000406040 927 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 AF274854.1-201ENST00000413236 615 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 OR51A3P-201ENST00000413596 924 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AL137014.1-201ENST00000420490 1226 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AL009174.1-201ENST00000426577 416 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.88□□□□□ -1.95
COL4A4P53420 AL353706.1-201ENST00000436728 494 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 Z99127.2-201ENST00000441426 334 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 TPTE2P6-202ENST00000445572 1007 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AL096829.2-201ENST00000446582 742 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
COL4A4P53420 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL4A4P53420 RPL32P14-201ENST00000463196 378 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AP002371.1-201ENST00000463604 433 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC008716.1-201ENST00000511084 513 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.88□□□□□ -1.95
COL4A4P53420 MTCO2P32-201ENST00000514865 403 ntBASIC2.88□□□□□ -1.95
COL4A4P53420 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms