Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CLDN3O15551 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.33□□□□□ -1.88
CLDN3O15551 UBE2D3P2-201ENST00000424409 445 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CLDN3O15551 TRIAP1P1-201ENST00000427062 225 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 PTGES3P1-201ENST00000439531 483 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CLDN3O15551 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.33□□□□□ -1.88
CLDN3O15551 HMGB3P6-201ENST00000444896 598 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 RFC5P1-201ENST00000454419 874 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.33□□□□□ -1.88
CLDN3O15551 AC093278.1-201ENST00000494700 600 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
CLDN3O15551 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.33□□□□□ -1.88
CLDN3O15551 RNU6-1095P-201ENST00000516148 108 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 AC009812.2-201ENST00000517657 457 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.33□□□□□ -1.88
CLDN3O15551 AP001804.3-201ENST00000525146 880 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.33□□□□□ -1.88
CLDN3O15551 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.33□□□□□ -1.88
CLDN3O15551 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.33□□□□□ -1.88
CLDN3O15551 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.33□□□□□ -1.88
CLDN3O15551 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.33□□□□□ -1.88
CLDN3O15551 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.33□□□□□ -1.88
CLDN3O15551 AC106900.2-201ENST00000604994 317 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.33□□□□□ -1.88
CLDN3O15551 MFSD8-245ENST00000641743 948 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.33□□□□□ -1.88
CLDN3O15551 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CLDN3O15551 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLDN3O15551 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CLDN3O15551 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLDN3O15551 MIR128-1-201ENST00000384921 82 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 Y_RNA.578-201ENST00000390903 88 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 RNU1-101P-201ENST00000391171 127 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 SNRPEP2-201ENST00000397592 279 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 AL079342.2-201ENST00000403367 482 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 C1DP1-201ENST00000426049 402 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 PSMA6P3-201ENST00000428242 164 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.32□□□□□ -1.88
CLDN3O15551 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.32□□□□□ -1.88
CLDN3O15551 MTCYBP34-201ENST00000439552 670 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 MTCYBP42-201ENST00000444653 1130 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 AC104308.1-201ENST00000454621 333 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.32□□□□□ -1.88
CLDN3O15551 RPL21P8-201ENST00000465083 535 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 S100A11P2-201ENST00000467589 312 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 AC068724.1-201ENST00000487100 792 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 AC006483.1-201ENST00000487308 313 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.32□□□□□ -1.88
CLDN3O15551 AC008427.1-201ENST00000503102 655 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 AC098799.1-201ENST00000504752 800 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 CBX3P3-201ENST00000508108 532 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.32□□□□□ -1.88
CLDN3O15551 RNU6-711P-201ENST00000517255 106 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 ERHP1-201ENST00000523006 310 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.32□□□□□ -1.88
CLDN3O15551 AC024224.1-201ENST00000538284 609 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.32□□□□□ -1.88
CLDN3O15551 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.32□□□□□ -1.88
CLDN3O15551 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.32□□□□□ -1.88
CLDN3O15551 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.32□□□□□ -1.88
CLDN3O15551 H3F3AP1-201ENST00000559984 334 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 BNIP3P24-201ENST00000593398 557 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 RPL23AP92-201ENST00000603609 255 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 BNIP3P11-201ENST00000603878 563 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 AC005000.2-201ENST00000605468 310 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 AC126544.2-201ENST00000625174 749 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 U6.101-201ENST00000637707 76 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 ZNF833P-201ENST00000424938 1494 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 ZNF807-201ENST00000328088 1707 ntBASIC3.32□□□□□ -1.88
CLDN3O15551 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CLDN3O15551 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLDN3O15551 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.31□□□□□ -1.88
CLDN3O15551 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.31□□□□□ -1.88
CLDN3O15551 RPL23AP57-201ENST00000332361 466 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 Y_RNA.25-201ENST00000362528 102 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 SNORD65.1-201ENST00000390889 71 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 AL354719.1-201ENST00000406535 843 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 AC096533.1-201ENST00000411645 353 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 RPL21P32-201ENST00000419877 477 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 AL137014.1-201ENST00000420490 1226 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 PTP4A1P7-201ENST00000423476 514 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.31□□□□□ -1.88
CLDN3O15551 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.31□□□□□ -1.88
CLDN3O15551 SNRPEP4-201ENST00000435815 279 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 AL645638.1-201ENST00000440519 361 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 AC079776.3-201ENST00000450665 370 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.31□□□□□ -1.88
CLDN3O15551 RPS29P2-201ENST00000479278 136 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 RPL23AP44-201ENST00000482216 473 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 OR2A20P-203ENST00000498397 1268 ntBASIC3.31□□□□□ -1.88
CLDN3O15551 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.31□□□□□ -1.88
CLDN3O15551 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.31□□□□□ -1.88
CLDN3O15551 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.31□□□□□ -1.88
CLDN3O15551 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.31□□□□□ -1.88
CLDN3O15551 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.31□□□□□ -1.88
CLDN3O15551 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CLDN3O15551 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms