Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.17□□□□□ -1.74
CUX2O14529 MIR6779-201ENST00000617283 64 ntBASIC4.17□□□□□ -1.74
CUX2O14529 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CUX2O14529 AC106730.3-201ENST00000624568 641 ntBASIC4.17□□□□□ -1.74
CUX2O14529 MTND5P27-201ENST00000428871 1720 ntBASIC4.17□□□□□ -1.74
CUX2O14529 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CUX2O14529 AC010733.2-201ENST00000589496 5702 ntBASIC4.16□□□□□ -1.74
CUX2O14529 RPL9P7-201ENST00000330965 580 ntBASIC4.16□□□□□ -1.74
CUX2O14529 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.16□□□□□ -1.74
CUX2O14529 MTCO3P31-201ENST00000405526 789 ntBASIC4.16□□□□□ -1.74
CUX2O14529 AC069218.2-201ENST00000411665 344 ntBASIC4.16□□□□□ -1.74
CUX2O14529 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CUX2O14529 LUZP4P1-201ENST00000415420 344 ntBASIC4.16□□□□□ -1.74
CUX2O14529 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.16□□□□□ -1.74
CUX2O14529 AC097499.1-201ENST00000444277 208 ntBASIC4.16□□□□□ -1.74
CUX2O14529 NPM1P49-201ENST00000448027 714 ntBASIC4.16□□□□□ -1.74
CUX2O14529 AC089999.1-201ENST00000460336 374 ntBASIC4.16□□□□□ -1.74
CUX2O14529 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.16□□□□□ -1.74
CUX2O14529 AC092185.1-201ENST00000491371 97 ntBASIC4.16□□□□□ -1.74
CUX2O14529 SNORA31.1-201ENST00000515993 133 ntBASIC4.16□□□□□ -1.74
CUX2O14529 SNORA31.5-201ENST00000516190 133 ntBASIC4.16□□□□□ -1.74
CUX2O14529 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.16□□□□□ -1.74
CUX2O14529 NF1P5-201ENST00000588287 448 ntBASIC4.16□□□□□ -1.74
CUX2O14529 AC115085.1-201ENST00000588924 229 ntBASIC4.16□□□□□ -1.74
CUX2O14529 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.16□□□□□ -1.74
CUX2O14529 AC012119.1-201ENST00000603184 222 ntBASIC4.16□□□□□ -1.74
CUX2O14529 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.16□□□□□ -1.74
CUX2O14529 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC4.16□□□□□ -1.74
CUX2O14529 AC107294.3-201ENST00000609211 526 ntBASIC4.16□□□□□ -1.74
CUX2O14529 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.16□□□□□ -1.74
CUX2O14529 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
CUX2O14529 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
CUX2O14529 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.74
CUX2O14529 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CUX2O14529 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.15□□□□□ -1.75
CUX2O14529 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CUX2O14529 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CUX2O14529 AL512633.1-201ENST00000399931 655 ntBASIC4.15□□□□□ -1.75
CUX2O14529 AC012498.1-201ENST00000424037 437 ntBASIC4.15□□□□□ -1.75
CUX2O14529 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.15□□□□□ -1.75
CUX2O14529 AC009969.1-201ENST00000438726 172 ntBASIC4.15□□□□□ -1.75
CUX2O14529 RN7SL297P-201ENST00000483161 293 ntBASIC4.15□□□□□ -1.75
CUX2O14529 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.15□□□□□ -1.75
CUX2O14529 AC092436.3-201ENST00000511788 257 ntBASIC4.15□□□□□ -1.75
CUX2O14529 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.15□□□□□ -1.75
CUX2O14529 AC087272.1-201ENST00000523624 533 ntBASIC4.15□□□□□ -1.75
CUX2O14529 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CUX2O14529 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.15□□□□□ -1.75
CUX2O14529 HMGB3P26-201ENST00000560051 582 ntBASIC4.15□□□□□ -1.75
CUX2O14529 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CUX2O14529 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CUX2O14529 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
CUX2O14529 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CUX2O14529 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CUX2O14529 RNA5SP325-201ENST00000363756 130 ntBASIC4.14□□□□□ -1.75
CUX2O14529 RNU6-650P-201ENST00000365658 111 ntBASIC4.14□□□□□ -1.75
CUX2O14529 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.14□□□□□ -1.75
CUX2O14529 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC4.14□□□□□ -1.75
CUX2O14529 RPS6P12-201ENST00000432491 726 ntBASIC4.14□□□□□ -1.75
CUX2O14529 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.14□□□□□ -1.75
CUX2O14529 AL451074.3-201ENST00000437709 472 ntBASIC4.14□□□□□ -1.75
CUX2O14529 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.14□□□□□ -1.75
CUX2O14529 AC108729.2-201ENST00000476543 840 ntBASIC4.14□□□□□ -1.75
CUX2O14529 AC106872.3-201ENST00000495104 446 ntBASIC4.14□□□□□ -1.75
CUX2O14529 AC021269.2-201ENST00000532318 330 ntBASIC4.14□□□□□ -1.75
CUX2O14529 AP001033.2-201ENST00000609701 1003 ntBASIC4.14□□□□□ -1.75
CUX2O14529 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CUX2O14529 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.14□□□□□ -1.75
CUX2O14529 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CUX2O14529 AC095050.2-201ENST00000510748 1458 ntBASIC4.14□□□□□ -1.75
CUX2O14529 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC4.14□□□□□ -1.75
CUX2O14529 Z73965.1-201ENST00000623412 2297 ntBASIC4.14□□□□□ -1.75
CUX2O14529 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CUX2O14529 RNU6-984P-201ENST00000363236 109 ntBASIC4.13□□□□□ -1.75
CUX2O14529 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.13□□□□□ -1.75
CUX2O14529 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.13□□□□□ -1.75
CUX2O14529 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.13□□□□□ -1.75
CUX2O14529 RPS27P5-201ENST00000444247 244 ntBASIC4.13□□□□□ -1.75
CUX2O14529 HMGB3P21-201ENST00000452483 547 ntBASIC4.13□□□□□ -1.75
CUX2O14529 TRBV26-201ENST00000456572 344 ntBASIC4.13□□□□□ -1.75
CUX2O14529 RPL23AP45-201ENST00000476406 468 ntBASIC4.13□□□□□ -1.75
CUX2O14529 AC068339.2-201ENST00000534395 618 ntBASIC4.13□□□□□ -1.75
CUX2O14529 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.13□□□□□ -1.75
CUX2O14529 RPL23AP84-201ENST00000571193 464 ntBASIC4.13□□□□□ -1.75
CUX2O14529 AP005136.1-201ENST00000579765 429 ntBASIC4.13□□□□□ -1.75
CUX2O14529 PCNAP1-202ENST00000595299 752 ntBASIC4.13□□□□□ -1.75
CUX2O14529 AP003117.1-201ENST00000602771 554 ntBASIC4.13□□□□□ -1.75
CUX2O14529 AC079610.2-201ENST00000604818 690 ntBASIC4.13□□□□□ -1.75
CUX2O14529 MIR1303-201ENST00000408625 86 ntBASIC4.12□□□□□ -1.75
CUX2O14529 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.12□□□□□ -1.75
CUX2O14529 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC4.12□□□□□ -1.75
CUX2O14529 MRPL50P4-201ENST00000446432 475 ntBASIC4.12□□□□□ -1.75
CUX2O14529 AL162388.1-201ENST00000450912 352 ntBASIC4.12□□□□□ -1.75
CUX2O14529 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.12□□□□□ -1.75
CUX2O14529 COL6A4P2-205ENST00000509855 506 ntBASIC4.12□□□□□ -1.75
CUX2O14529 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.12□□□□□ -1.75
CUX2O14529 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC4.12□□□□□ -1.75
CUX2O14529 OSBPL9P3-201ENST00000534523 595 ntBASIC4.12□□□□□ -1.75
CUX2O14529 AL845331.3-202ENST00000562856 261 ntBASIC4.12□□□□□ -1.75
CUX2O14529 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms