Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 NANOGNBP1-201ENST00000448444 480 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 RPL37P6-202ENST00000464216 403 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 RPS3AP17-201ENST00000472594 777 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC083829.1-201ENST00000503756 657 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC006390.1-201ENST00000508068 283 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC022483.1-201ENST00000514020 567 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 RN7SKP244-201ENST00000516513 307 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 RNU6-1178P-201ENST00000516674 107 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 EEF1B2P4-201ENST00000551398 348 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 MIR4700-201ENST00000578311 74 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 MIR4801-201ENST00000582704 82 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AL161729.4-201ENST00000604650 476 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 HMGB1P50-201ENST00000605814 607 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 MIR6820-201ENST00000611508 62 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AC138649.3-201ENST00000622154 254 ntBASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.69□□□□□ -1.66
LIMCH1Q9UPQ0 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 RNA5SP399-201ENST00000364003 117 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 RN7SKP226-201ENST00000364912 300 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 RNU6-1207P-201ENST00000384343 107 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 RPL7AP73-201ENST00000413490 353 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AL353777.1-201ENST00000425552 326 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC009961.2-201ENST00000435771 251 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 UBE2V1P13-201ENST00000436983 439 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 RPS11P1-201ENST00000451072 473 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 RN7SL860P-201ENST00000473738 223 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC004924.1-201ENST00000480160 781 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 RPL23AP41-201ENST00000484754 458 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 KCTD9P5-201ENST00000504141 1170 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 COX7A2P2-201ENST00000505291 250 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 MTCO3P44-201ENST00000510977 541 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC011352.1-201ENST00000512300 793 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC010342.1-201ENST00000514047 877 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 DEFB109D-201ENST00000529497 240 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC009643.1-201ENST00000532030 391 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC068790.5-201ENST00000602741 355 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 DUXAP4-201ENST00000603046 613 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC098614.4-201ENST00000607601 462 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC007684.1-201ENST00000609671 477 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC105429.2-201ENST00000610567 517 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC010149.2-201ENST00000637608 315 ntBASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIMCH1Q9UPQ0 AC092125.1-201ENST00000562568 1995 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC009951.1-201ENST00000623674 2614 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 RNU6-339P-201ENST00000384310 107 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 RNU1-89P-201ENST00000384592 164 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 U3.29-201ENST00000391296 212 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 MRPL42P2-201ENST00000403169 426 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC016397.1-201ENST00000412463 242 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC108032.1-201ENST00000416706 207 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 RPS27AP12-201ENST00000429552 465 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 MTCYBP45-201ENST00000435243 565 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 ARPC3P1-201ENST00000437218 533 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 OFD1P4Y-201ENST00000455273 1179 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 RPS4XP10-201ENST00000465034 731 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 RPL9P6-201ENST00000492764 598 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 Y_RNA.672-201ENST00000516289 104 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 CDH12P4-201ENST00000517835 295 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 CDH12P3-201ENST00000517935 295 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 CDH12P1-201ENST00000518435 295 ntBASIC4.67□□□□□ -1.66
LIMCH1Q9UPQ0 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms