Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL450338.1-201ENST00000407987 512 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 RNA5SP107-201ENST00000411358 122 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AL161449.1-201ENST00000414531 1199 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC063979.1-201ENST00000415539 377 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 Z75741.2-201ENST00000417272 1167 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AL449283.1-202ENST00000418249 604 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 RPL7P44-201ENST00000424827 742 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 PSMA6P3-201ENST00000428242 164 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 RNF2P1-201ENST00000442955 1010 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 MTCYBP11-201ENST00000447254 1109 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 RPL39P6-201ENST00000448289 150 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 HMGN1P18-201ENST00000457642 277 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 RPS15AP17-201ENST00000470598 390 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC109925.1-201ENST00000478069 331 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 MLLT10P2-201ENST00000506434 249 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 RNU1-61P-201ENST00000516107 151 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 RNU6-1095P-201ENST00000516148 108 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC074050.1-201ENST00000563247 211 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC005951.1-201ENST00000576706 485 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 MIR5680-201ENST00000577577 84 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 MIR2682-201ENST00000580305 110 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 ZNF415P1-201ENST00000582279 1166 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 AL606834.2-201ENST00000602954 668 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AL110115.1-201ENST00000614396 364 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 MIR7112-201ENST00000616126 65 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 CYCSP41-201ENST00000616920 296 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC073348.1-201ENST00000623002 331 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 OR1S1-201ENST00000624470 978 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 AC120349.2-201ENST00000625002 298 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VPS35Q96QK1 SGO1P2-201ENST00000429458 1589 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS35Q96QK1 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 SNRPEP3-201ENST00000338402 276 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS35Q96QK1 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 RNU4-65P-201ENST00000410473 140 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 RN7SKP123-201ENST00000410732 291 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC092427.1-201ENST00000439177 601 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 HSPE1P28-201ENST00000443139 211 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 RFC5P1-201ENST00000454419 874 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 RPL23AP31-201ENST00000456160 467 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC026410.2-201ENST00000460281 156 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC017015.1-201ENST00000477387 286 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC012181.1-201ENST00000479895 423 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 MTND4LP22-201ENST00000508209 276 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 FAM60BP-201ENST00000578364 658 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC004832.5-201ENST00000608677 401 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 VIS1.1-201ENST00000610517 203 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC023158.2-201ENST00000614876 543 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AF117829.1-206ENST00000621883 3802 ntBASIC3.2□□□□□ -1.9
VPS35Q96QK1 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VPS35Q96QK1 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
VPS35Q96QK1 AC109315.1-201ENST00000584143 1347 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC002546.1-201ENST00000588041 2504 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 MIR208A-201ENST00000362287 71 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 SNORA40.2-201ENST00000390847 128 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AL591034.1-201ENST00000407447 340 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 RPL7P30-201ENST00000420888 709 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 MRPS36P1-201ENST00000421291 307 ntBASIC3.19□□□□□ -1.9
VPS35Q96QK1 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS35Q96QK1 RPL7P46-201ENST00000425129 740 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms