Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC118282.1-201ENST00000506408 765 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 SNORA31.8-201ENST00000516327 108 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 MTND2P7-201ENST00000521337 640 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC022690.1-201ENST00000526681 550 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC118942.1-201ENST00000529674 1035 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 MTCO3P24-201ENST00000572729 782 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 MIR3912-201ENST00000577566 105 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 RN7SL339P-201ENST00000580597 296 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AP001330.4-201ENST00000604350 154 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC005332.6-201ENST00000613178 446 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AL353748.2-201ENST00000622148 471 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 AC104985.3-201ENST00000623479 597 ntBASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC40Q4G0X9 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 MTND5P19-201ENST00000424872 1794 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 MIR23B-201ENST00000384832 97 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 CYCSP45-201ENST00000402289 315 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AL450338.1-201ENST00000407987 512 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC245054.2-201ENST00000415639 319 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 HSPE1P1-201ENST00000421494 318 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC233728.2-201ENST00000425348 757 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 PSMA6P3-201ENST00000428242 164 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 RPL21P40-201ENST00000428586 483 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 GTF2IP3-201ENST00000433887 494 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC108734.1-201ENST00000439549 399 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 RPL36AP33-201ENST00000450395 310 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 ELOCP23-201ENST00000452014 332 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC091179.1-201ENST00000461606 579 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 RN7SL75P-201ENST00000461926 281 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC069528.1-202ENST00000482888 637 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 RPL21P129-201ENST00000491732 478 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 MLLT10P2-201ENST00000506434 249 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 KLHL2P1-201ENST00000508691 521 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 RNU6-1095P-201ENST00000516148 108 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 SNORA19.3-201ENST00000516165 130 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 SNORD59.2-201ENST00000516873 68 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 DUXAP2-201ENST00000519198 589 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC087808.1-201ENST00000520501 361 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 LRRC6P1-201ENST00000532188 885 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 SNRPGP16-201ENST00000533275 226 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 BNIP3P24-201ENST00000593398 557 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 BDH2P1-201ENST00000602288 736 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC069545.1-201ENST00000605671 358 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC018645.2-201ENST00000609151 472 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AC010872.1-201ENST00000624225 675 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 AL138960.2-201ENST00000625145 535 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 U6.105-201ENST00000637379 88 ntBASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC40Q4G0X9 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 snoZ40.1-201ENST00000364540 72 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 SNORA51.4-201ENST00000364993 124 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 MIR183-201ENST00000384958 110 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 SNRPEP2-201ENST00000397592 279 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 RPS3AP26-201ENST00000398259 784 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 RNU6-1077P-201ENST00000410506 102 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 RNU2-42P-201ENST00000410697 113 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 OR4K6P-201ENST00000416478 897 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 AC007435.1-201ENST00000421086 415 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 RPL7P44-201ENST00000424827 742 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 USP9YP22-201ENST00000438971 294 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 HSPE1P28-201ENST00000443139 211 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 VN1R34P-201ENST00000447387 883 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 GAPDHP27-201ENST00000447427 1020 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 AC140076.1-201ENST00000449897 361 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 RPL7P5-201ENST00000471472 736 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 AC104982.1-201ENST00000478775 574 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 AC006483.1-201ENST00000487308 313 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 AC079203.1-201ENST00000487972 404 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 ERHP1-201ENST00000523006 310 ntBASIC3.43□□□□□ -1.86
CCDC40Q4G0X9 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms