Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RNU4-65P-201ENST00000410473 140 ntBASIC4.9□□□□□ -1.63
RNF4P78317 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.9□□□□□ -1.63
RNF4P78317 RPL31P12-201ENST00000422587 358 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.9□□□□□ -1.63
RNF4P78317 SKA2P1-201ENST00000425592 390 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AL360081.1-201ENST00000428299 555 ntBASIC4.9□□□□□ -1.63
RNF4P78317 RPL23AP89-201ENST00000439324 255 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.9□□□□□ -1.63
RNF4P78317 EIF4A1P11-201ENST00000451239 222 ntBASIC4.9□□□□□ -1.63
RNF4P78317 Z92846.1-201ENST00000456203 268 ntBASIC4.9□□□□□ -1.63
RNF4P78317 snoU109.4-201ENST00000458953 143 ntBASIC4.9□□□□□ -1.63
RNF4P78317 MIR2053-201ENST00000459295 91 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC116533.1-201ENST00000459748 321 ntBASIC4.9□□□□□ -1.63
RNF4P78317 RPS27AP1-201ENST00000475545 471 ntBASIC4.9□□□□□ -1.63
RNF4P78317 RN7SL799P-201ENST00000475891 298 ntBASIC4.9□□□□□ -1.63
RNF4P78317 RN7SL432P-201ENST00000484057 298 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC004453.1-201ENST00000487895 408 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC022133.1-201ENST00000490961 571 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC025164.1-201ENST00000496249 478 ntBASIC4.9□□□□□ -1.63
RNF4P78317 MTCYBP40-201ENST00000509390 1135 ntBASIC4.9□□□□□ -1.63
RNF4P78317 SMURF2P1-201ENST00000514992 481 ntBASIC4.9□□□□□ -1.63
RNF4P78317 RNA5SP230-201ENST00000517039 122 ntBASIC4.9□□□□□ -1.63
RNF4P78317 HMGB1P19-201ENST00000517578 577 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC022634.1-201ENST00000520765 532 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC135001.1-201ENST00000544546 283 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC063950.1-201ENST00000552036 308 ntBASIC4.9□□□□□ -1.63
RNF4P78317 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.9□□□□□ -1.63
RNF4P78317 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.9□□□□□ -1.63
RNF4P78317 RPL23AP84-201ENST00000571193 464 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC100830.2-201ENST00000581636 240 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC008521.1-201ENST00000587471 187 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AF038458.1-201ENST00000588406 262 ntBASIC4.9□□□□□ -1.63
RNF4P78317 OR7E18P-201ENST00000592589 702 ntBASIC4.9□□□□□ -1.63
RNF4P78317 XIAPP1-201ENST00000603162 600 ntBASIC4.9□□□□□ -1.63
RNF4P78317 SDR42E1P1-201ENST00000611327 477 ntBASIC4.9□□□□□ -1.63
RNF4P78317 AC010632.3-201ENST00000611377 369 ntBASIC4.9□□□□□ -1.63
RNF4P78317 RMST_9.1-201ENST00000619945 193 ntBASIC4.9□□□□□ -1.63
RNF4P78317 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.9□□□□□ -1.63
RNF4P78317 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.9□□□□□ -1.63
RNF4P78317 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
RNF4P78317 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.9□□□□□ -1.63
RNF4P78317 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.9□□□□□ -1.63
RNF4P78317 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
RNF4P78317 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
RNF4P78317 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.9□□□□□ -1.63
RNF4P78317 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
RNF4P78317 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
RNF4P78317 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.9□□□□□ -1.63
RNF4P78317 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.9□□□□□ -1.63
RNF4P78317 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
RNF4P78317 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 PHKBP1-201ENST00000450951 1951 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AC000374.1-201ENST00000434698 1745 ntBASIC4.89□□□□□ -1.63
RNF4P78317 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 AC027287.1-201ENST00000553115 1453 ntBASIC4.89□□□□□ -1.63
RNF4P78317 MTND5P19-201ENST00000424872 1794 ntBASIC4.89□□□□□ -1.63
RNF4P78317 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
RNF4P78317 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.89□□□□□ -1.63
RNF4P78317 AC009951.1-201ENST00000623674 2614 ntBASIC4.89□□□□□ -1.63
RNF4P78317 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
RNF4P78317 XIAPP3-201ENST00000312918 795 ntBASIC4.89□□□□□ -1.63
RNF4P78317 RNU6-1284P-201ENST00000363701 100 ntBASIC4.89□□□□□ -1.63
RNF4P78317 Y_RNA.212-201ENST00000364177 102 ntBASIC4.89□□□□□ -1.63
RNF4P78317 RNU6-601P-201ENST00000384540 107 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AL121834.1-202ENST00000404494 277 ntBASIC4.89□□□□□ -1.63
RNF4P78317 DUTP5-201ENST00000406790 469 ntBASIC4.89□□□□□ -1.63
RNF4P78317 VDAC1P9-201ENST00000412766 841 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.89□□□□□ -1.63
RNF4P78317 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.89□□□□□ -1.63
RNF4P78317 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.89□□□□□ -1.63
RNF4P78317 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.89□□□□□ -1.63
RNF4P78317 GAPDHP27-201ENST00000447427 1020 ntBASIC4.89□□□□□ -1.63
RNF4P78317 MTND1P17-201ENST00000448961 204 ntBASIC4.89□□□□□ -1.63
RNF4P78317 FABP5P13-201ENST00000452144 328 ntBASIC4.89□□□□□ -1.63
RNF4P78317 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.89□□□□□ -1.63
RNF4P78317 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.89□□□□□ -1.63
RNF4P78317 RN7SL222P-201ENST00000476452 299 ntBASIC4.89□□□□□ -1.63
RNF4P78317 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.89□□□□□ -1.63
RNF4P78317 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.89□□□□□ -1.63
RNF4P78317 RPS24P16-201ENST00000497294 392 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.89□□□□□ -1.63
RNF4P78317 HIGD1AP13-201ENST00000509878 289 ntBASIC4.89□□□□□ -1.63
RNF4P78317 RN7SKP82-201ENST00000516786 223 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.89□□□□□ -1.63
RNF4P78317 OR5D15P-201ENST00000531671 942 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.89□□□□□ -1.63
RNF4P78317 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.89□□□□□ -1.63
RNF4P78317 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.89□□□□□ -1.63
RNF4P78317 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.89□□□□□ -1.63
RNF4P78317 AC106782.4-201ENST00000568264 210 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
RNF4P78317 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
RNF4P78317 AC008162.1-201ENST00000604718 254 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AL670379.4-201ENST00000605279 254 ntBASIC4.89□□□□□ -1.63
RNF4P78317 SNHG22-203ENST00000617833 660 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AC091925.1-201ENST00000623204 462 ntBASIC4.89□□□□□ -1.63
RNF4P78317 AC008013.2-202ENST00000637965 364 ntBASIC4.89□□□□□ -1.63
RNF4P78317 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms