Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA1P55317 RNU6-1243P-201ENST00000364028 107 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 RNA5SP181-201ENST00000410246 98 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA1P55317 MTCO2P17-201ENST00000424336 677 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 AL590762.3-201ENST00000436372 640 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 RPS12P2-201ENST00000439728 269 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 AP000936.2-201ENST00000447151 681 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 SNORD109B-201ENST00000458961 67 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 SNORD109A-201ENST00000459128 67 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 AC096576.1-201ENST00000489014 359 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC2.42□□□□□ -2.02
FOXA1P55317 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC2.42□□□□□ -2.02
FOXA1P55317 COX6CP8-201ENST00000522620 226 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 OR8K2P-201ENST00000524645 927 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
FOXA1P55317 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA1P55317 MTCYBP28-201ENST00000566728 1132 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 AC095057.3-201ENST00000567102 1157 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC2.42□□□□□ -2.02
FOXA1P55317 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA1P55317 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA1P55317 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.42□□□□□ -2.02
FOXA1P55317 BNIP3P4-201ENST00000604946 565 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 AC021851.1-201ENST00000608537 1082 ntBASIC2.42□□□□□ -2.02
FOXA1P55317 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
FOXA1P55317 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA1P55317 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
FOXA1P55317 AL365361.1-201ENST00000566942 3481 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 MTND5P28-201ENST00000438005 1594 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 OR5J1P-201ENST00000313544 939 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
FOXA1P55317 MIR16-2-201ENST00000362117 81 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 RNU6-481P-201ENST00000384194 107 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 Y_RNA.500-201ENST00000384466 111 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 MIR525-201ENST00000384978 85 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA1P55317 MIR1289-1-201ENST00000408836 144 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 RNA5SP492-201ENST00000411330 114 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 AC008173.1-201ENST00000418901 264 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 PAICSP7-201ENST00000419829 962 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 HSPE1P1-201ENST00000421494 318 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA1P55317 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA1P55317 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA1P55317 AC109583.1-201ENST00000432156 268 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA1P55317 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA1P55317 AC092170.1-201ENST00000440211 356 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.41□□□□□ -2.02
FOXA1P55317 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA1P55317 RPL7P55-201ENST00000450522 746 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA1P55317 BX248409.1-201ENST00000455497 255 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 NFU1-207ENST00000462320 558 ntTSL 4 BASIC2.41□□□□□ -2.02
FOXA1P55317 VN1R17P-201ENST00000472048 1090 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.41□□□□□ -2.02
FOXA1P55317 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.41□□□□□ -2.02
FOXA1P55317 COL6A4P2-205ENST00000509855 506 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 RPL23AP94-201ENST00000512518 302 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA1P55317 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA1P55317 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA1P55317 AC079148.1-201ENST00000565944 819 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 TPMTP1-201ENST00000592307 737 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 AC112503.2-201ENST00000609005 552 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 AL137847.3-201ENST00000611521 109 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 VN1R9P-201ENST00000614184 867 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
FOXA1P55317 AC097460.3-201ENST00000623099 442 ntBASIC2.41□□□□□ -2.02
FOXA1P55317 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.41□□□□□ -2.02
FOXA1P55317 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
FOXA1P55317 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.4□□□□□ -2.02
FOXA1P55317 RNU6-859P-201ENST00000362728 107 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 RNA5SP456-201ENST00000364002 114 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC2.4□□□□□ -2.03
FOXA1P55317 RNU6-1151P-201ENST00000384684 107 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 AC073264.1-201ENST00000411508 416 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 AC005517.2-201ENST00000424673 553 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA1P55317 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
FOXA1P55317 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA1P55317 SSXP4-201ENST00000451349 245 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA1P55317 AC087879.1-201ENST00000474343 374 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 AC097462.2-201ENST00000504623 481 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
FOXA1P55317 AC096725.1-201ENST00000514266 313 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 SNORD59.2-201ENST00000516873 68 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 RNU6-56P-201ENST00000516986 93 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.4□□□□□ -2.03
FOXA1P55317 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA1P55317 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC2.4□□□□□ -2.03
FOXA1P55317 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC2.4□□□□□ -2.03
FOXA1P55317 MIR3690-201ENST00000580266 75 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 MIR4298-201ENST00000584380 73 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 AC061975.8-201ENST00000587058 721 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 VN1R88P-201ENST00000596787 292 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 AC010620.2-201ENST00000600135 313 ntBASIC2.4□□□□□ -2.03
FOXA1P55317 SNRPGP15-201ENST00000600149 222 ntBASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms