Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A4P53420 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A4P53420 AC134882.1-201ENST00000603738 1676 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
COL4A4P53420 LINC01355-201ENST00000566551 5444 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 RNU6-623P-201ENST00000363143 105 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 Y_RNA.169-201ENST00000363745 96 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 RNU5A-2P-201ENST00000384337 116 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A4P53420 Y_RNA.604-201ENST00000410574 102 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 RPL30P16-201ENST00000419341 429 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC241520.1-201ENST00000422654 1099 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.92□□□□□ -1.94
COL4A4P53420 MTND4P25-201ENST00000441039 533 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC2.92□□□□□ -1.94
COL4A4P53420 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.92□□□□□ -1.94
COL4A4P53420 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.92□□□□□ -1.94
COL4A4P53420 AC021205.1-201ENST00000468797 348 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC2.92□□□□□ -1.94
COL4A4P53420 RPS29P21-201ENST00000496272 170 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC005921.1-201ENST00000510589 286 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC2.92□□□□□ -1.94
COL4A4P53420 OR10V3P-201ENST00000525712 725 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.92□□□□□ -1.94
COL4A4P53420 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.92□□□□□ -1.94
COL4A4P53420 AC024909.2-201ENST00000553035 286 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC055876.1-202ENST00000567053 138 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AL139286.1-201ENST00000604465 483 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC107952.2-201ENST00000606048 486 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AP002360.4-201ENST00000606980 481 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC092608.3-201ENST00000625017 386 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC2.92□□□□□ -1.94
COL4A4P53420 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.92□□□□□ -1.94
COL4A4P53420 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.91□□□□□ -1.94
COL4A4P53420 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
COL4A4P53420 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
COL4A4P53420 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
COL4A4P53420 DCAF13P3-201ENST00000561147 1334 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 MIR26A1-201ENST00000362205 77 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
COL4A4P53420 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
COL4A4P53420 RNA5SP425-201ENST00000410336 112 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC2.91□□□□□ -1.94
COL4A4P53420 TRGV6-201ENST00000417928 299 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC2.91□□□□□ -1.94
COL4A4P53420 AL159169.1-201ENST00000421119 127 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC2.91□□□□□ -1.94
COL4A4P53420 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC2.91□□□□□ -1.94
COL4A4P53420 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.91□□□□□ -1.94
COL4A4P53420 AL591806.2-201ENST00000433122 173 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.91□□□□□ -1.94
COL4A4P53420 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC2.91□□□□□ -1.94
COL4A4P53420 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.91□□□□□ -1.94
COL4A4P53420 XKRY2-201ENST00000442362 1093 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.91□□□□□ -1.94
COL4A4P53420 AC004022.1-201ENST00000447766 1066 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 NPM1P49-201ENST00000448027 714 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 SEPT7P3-201ENST00000455017 621 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 RPL23AP31-201ENST00000456160 467 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 USP9YP25-201ENST00000457708 443 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.91□□□□□ -1.94
COL4A4P53420 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.91□□□□□ -1.94
COL4A4P53420 RNU6-276P-201ENST00000516114 96 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 AC015712.3-201ENST00000559380 164 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.91□□□□□ -1.94
COL4A4P53420 AC083760.1-201ENST00000589621 670 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 AL450489.1-201ENST00000612071 468 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 AL355073.2-201ENST00000612106 557 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 AC019226.1-201ENST00000625666 515 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.91□□□□□ -1.94
COL4A4P53420 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
COL4A4P53420 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.9□□□□□ -1.94
COL4A4P53420 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
COL4A4P53420 AC012078.1-201ENST00000405035 1646 ntBASIC2.9□□□□□ -1.94
COL4A4P53420 ELL2P3-201ENST00000457883 1602 ntBASIC2.9□□□□□ -1.94
COL4A4P53420 AC026523.2-201ENST00000625039 7739 ntBASIC2.9□□□□□ -1.94
COL4A4P53420 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.94
COL4A4P53420 SGO1P1-201ENST00000603525 1447 ntBASIC2.9□□□□□ -1.94
COL4A4P53420 ZNF736P9Y-201ENST00000439586 1345 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
COL4A4P53420 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
COL4A4P53420 RNU4-24P-201ENST00000364565 139 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AL356131.1-201ENST00000405826 414 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 UBE2V1P11-201ENST00000411559 285 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 PTP4A1P5-201ENST00000420305 455 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AL049610.1-201ENST00000423374 372 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AL589823.1-201ENST00000429577 183 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC2.9□□□□□ -1.95
COL4A4P53420 USP9YP24-201ENST00000434374 697 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC2.9□□□□□ -1.95
COL4A4P53420 MTCO1P53-201ENST00000441633 699 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AL353572.1-201ENST00000442490 417 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 USP9YP17-201ENST00000444617 696 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 MTND2P4-201ENST00000445034 1004 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.9□□□□□ -1.95
COL4A4P53420 SNRPGP5-201ENST00000456003 220 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 NAP1L1P3-201ENST00000462291 880 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
COL4A4P53420 HMGB1P38-201ENST00000490557 577 ntBASIC2.9□□□□□ -1.95
COL4A4P53420 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms