Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
BDNFP23560 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.97□□□□□ -1.77
BDNFP23560 AC091564.1-201ENST00000464563 479 ntBASIC3.97□□□□□ -1.77
BDNFP23560 AC021382.1-201ENST00000483523 359 ntBASIC3.97□□□□□ -1.77
BDNFP23560 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.97□□□□□ -1.77
BDNFP23560 PCBP2P3-201ENST00000509726 843 ntBASIC3.97□□□□□ -1.77
BDNFP23560 AC010587.2-201ENST00000511727 448 ntBASIC3.97□□□□□ -1.77
BDNFP23560 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.97□□□□□ -1.77
BDNFP23560 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.97□□□□□ -1.77
BDNFP23560 OR5G4P-201ENST00000525251 760 ntBASIC3.97□□□□□ -1.77
BDNFP23560 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.97□□□□□ -1.77
BDNFP23560 GTF2IP22-201ENST00000554443 182 ntBASIC3.97□□□□□ -1.77
BDNFP23560 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
BDNFP23560 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.97□□□□□ -1.77
BDNFP23560 AL137849.1-201ENST00000604767 169 ntBASIC3.97□□□□□ -1.77
BDNFP23560 RNU1-30P-201ENST00000606575 163 ntBASIC3.97□□□□□ -1.77
BDNFP23560 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.97□□□□□ -1.77
BDNFP23560 AC243312.2-201ENST00000623340 601 ntBASIC3.97□□□□□ -1.77
BDNFP23560 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.97□□□□□ -1.77
BDNFP23560 OR8B1P-202ENST00000641132 1178 ntBASIC3.97□□□□□ -1.77
BDNFP23560 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
BDNFP23560 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.97□□□□□ -1.77
BDNFP23560 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
BDNFP23560 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
BDNFP23560 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
BDNFP23560 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
BDNFP23560 AC092435.3-201ENST00000565538 3654 ntBASIC3.96□□□□□ -1.78
BDNFP23560 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
BDNFP23560 MFSD8-236ENST00000641509 4050 ntBASIC3.96□□□□□ -1.78
BDNFP23560 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
BDNFP23560 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
BDNFP23560 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
BDNFP23560 SNORD116.1-201ENST00000365628 92 ntBASIC3.96□□□□□ -1.78
BDNFP23560 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
BDNFP23560 RNU6-637P-201ENST00000384050 107 ntBASIC3.96□□□□□ -1.78
BDNFP23560 SNORA5A-201ENST00000384111 134 ntBASIC3.96□□□□□ -1.78
BDNFP23560 RNU6-1207P-201ENST00000384343 107 ntBASIC3.96□□□□□ -1.78
BDNFP23560 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.96□□□□□ -1.78
BDNFP23560 MTND1P21-201ENST00000412991 285 ntBASIC3.96□□□□□ -1.78
BDNFP23560 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
BDNFP23560 MRPL50P2-201ENST00000416821 482 ntBASIC3.96□□□□□ -1.78
BDNFP23560 AC083875.1-201ENST00000419509 405 ntBASIC3.96□□□□□ -1.78
BDNFP23560 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.96□□□□□ -1.78
BDNFP23560 NDUFB4P7-201ENST00000423198 363 ntBASIC3.96□□□□□ -1.78
BDNFP23560 DPPA2P1-201ENST00000428060 556 ntBASIC3.96□□□□□ -1.78
BDNFP23560 AC108734.1-201ENST00000439549 399 ntBASIC3.96□□□□□ -1.78
BDNFP23560 AL356535.1-201ENST00000440335 398 ntBASIC3.96□□□□□ -1.78
BDNFP23560 HMGB3P8-201ENST00000449709 577 ntBASIC3.96□□□□□ -1.78
BDNFP23560 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.96□□□□□ -1.78
BDNFP23560 SETP11-201ENST00000473027 690 ntBASIC3.96□□□□□ -1.78
BDNFP23560 HMGN1P11-201ENST00000508668 303 ntBASIC3.96□□□□□ -1.78
BDNFP23560 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.96□□□□□ -1.78
BDNFP23560 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.96□□□□□ -1.78
BDNFP23560 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.96□□□□□ -1.78
BDNFP23560 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
BDNFP23560 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.96□□□□□ -1.78
BDNFP23560 AC090186.1-201ENST00000605991 572 ntBASIC3.96□□□□□ -1.78
BDNFP23560 MIR92B-201ENST00000607575 96 ntBASIC3.96□□□□□ -1.78
BDNFP23560 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.96□□□□□ -1.78
BDNFP23560 AC079597.1-201ENST00000624306 508 ntBASIC3.96□□□□□ -1.78
BDNFP23560 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
BDNFP23560 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.96□□□□□ -1.78
BDNFP23560 AC244258.1-201ENST00000637553 1071 ntBASIC3.96□□□□□ -1.78
BDNFP23560 AP000526.1-201ENST00000603308 1388 ntBASIC3.96□□□□□ -1.78
BDNFP23560 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.96□□□□□ -1.78
BDNFP23560 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.78
BDNFP23560 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.96□□□□□ -1.78
BDNFP23560 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
BDNFP23560 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.95□□□□□ -1.78
BDNFP23560 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
BDNFP23560 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
BDNFP23560 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.95□□□□□ -1.78
BDNFP23560 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
BDNFP23560 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
BDNFP23560 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
BDNFP23560 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.95□□□□□ -1.78
BDNFP23560 RHEBP3-201ENST00000411920 351 ntBASIC3.95□□□□□ -1.78
BDNFP23560 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
BDNFP23560 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.95□□□□□ -1.78
BDNFP23560 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
BDNFP23560 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.95□□□□□ -1.78
BDNFP23560 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.95□□□□□ -1.78
BDNFP23560 TRIAP1P1-201ENST00000427062 225 ntBASIC3.95□□□□□ -1.78
BDNFP23560 RPS25P9-201ENST00000435591 252 ntBASIC3.95□□□□□ -1.78
BDNFP23560 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.95□□□□□ -1.78
BDNFP23560 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.95□□□□□ -1.78
BDNFP23560 RNU6-420P-201ENST00000458780 107 ntBASIC3.95□□□□□ -1.78
BDNFP23560 RPL7P15-201ENST00000461190 712 ntBASIC3.95□□□□□ -1.78
BDNFP23560 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC3.95□□□□□ -1.78
BDNFP23560 RPL7P18-201ENST00000478965 734 ntBASIC3.95□□□□□ -1.78
BDNFP23560 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.95□□□□□ -1.78
BDNFP23560 SLC25A15P5-201ENST00000508033 253 ntBASIC3.95□□□□□ -1.78
BDNFP23560 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.95□□□□□ -1.78
BDNFP23560 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.95□□□□□ -1.78
BDNFP23560 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.95□□□□□ -1.78
BDNFP23560 GMPSP1-201ENST00000514075 579 ntBASIC3.95□□□□□ -1.78
BDNFP23560 AC239860.2-201ENST00000525886 270 ntBASIC3.95□□□□□ -1.78
BDNFP23560 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.95□□□□□ -1.78
BDNFP23560 AC011602.1-201ENST00000546484 331 ntBASIC3.95□□□□□ -1.78
BDNFP23560 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms