Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MTCYBP34-201ENST00000439552 670 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC2.68□□□□□ -1.98
USF1P22415 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.68□□□□□ -1.98
USF1P22415 AL445669.2-201ENST00000454425 421 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC108860.1-201ENST00000484521 383 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC096576.1-201ENST00000489014 359 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC080014.1-201ENST00000496877 1201 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.68□□□□□ -1.98
USF1P22415 RNU6-27P-201ENST00000516146 107 ntBASIC2.68□□□□□ -1.98
USF1P22415 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC2.68□□□□□ -1.98
USF1P22415 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.68□□□□□ -1.98
USF1P22415 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC2.68□□□□□ -1.98
USF1P22415 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.68□□□□□ -1.98
USF1P22415 PSMA2P1-201ENST00000526365 646 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.68□□□□□ -1.98
USF1P22415 ZNF971P-201ENST00000562068 1249 ntBASIC2.68□□□□□ -1.98
USF1P22415 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
USF1P22415 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.68□□□□□ -1.98
USF1P22415 COX6CP3-201ENST00000580869 223 ntBASIC2.68□□□□□ -1.98
USF1P22415 MAGOH2P-202ENST00000584384 429 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.68□□□□□ -1.98
USF1P22415 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC2.68□□□□□ -1.98
USF1P22415 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC2.68□□□□□ -1.98
USF1P22415 AP003973.1-201ENST00000604639 691 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC010738.1-201ENST00000604970 987 ntBASIC2.68□□□□□ -1.98
USF1P22415 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.68□□□□□ -1.98
USF1P22415 VN1R7P-201ENST00000619242 903 ntBASIC2.68□□□□□ -1.98
USF1P22415 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.68□□□□□ -1.98
USF1P22415 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
USF1P22415 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
USF1P22415 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.68□□□□□ -1.98
USF1P22415 MTND5P7-201ENST00000413558 1798 ntBASIC2.67□□□□□ -1.98
USF1P22415 SNORA80A-201ENST00000363922 136 ntBASIC2.67□□□□□ -1.98
USF1P22415 MIR217-201ENST00000384817 110 ntBASIC2.67□□□□□ -1.98
USF1P22415 RPS3AP26-201ENST00000398259 784 ntBASIC2.67□□□□□ -1.98
USF1P22415 RNU6-1077P-201ENST00000410506 102 ntBASIC2.67□□□□□ -1.98
USF1P22415 AC092447.6-201ENST00000414578 210 ntBASIC2.67□□□□□ -1.98
USF1P22415 SDCBPP3-201ENST00000419629 891 ntBASIC2.67□□□□□ -1.98
USF1P22415 AC079780.1-201ENST00000428259 207 ntBASIC2.67□□□□□ -1.98
USF1P22415 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC2.67□□□□□ -1.98
USF1P22415 ELOCP23-201ENST00000452014 332 ntBASIC2.67□□□□□ -1.98
USF1P22415 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.67□□□□□ -1.98
USF1P22415 RPL21P18-201ENST00000469899 480 ntBASIC2.67□□□□□ -1.98
USF1P22415 RN7SL283P-201ENST00000489055 303 ntBASIC2.67□□□□□ -1.98
USF1P22415 BOLA3P3-201ENST00000505182 232 ntBASIC2.67□□□□□ -1.98
USF1P22415 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC2.67□□□□□ -1.98
USF1P22415 AC026412.2-201ENST00000512270 1075 ntBASIC2.67□□□□□ -1.98
USF1P22415 AC104027.1-201ENST00000521887 300 ntBASIC2.67□□□□□ -1.98
USF1P22415 AC022690.1-201ENST00000526681 550 ntBASIC2.67□□□□□ -1.98
USF1P22415 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.67□□□□□ -1.98
USF1P22415 AC008127.2-201ENST00000549925 1075 ntBASIC2.67□□□□□ -1.98
USF1P22415 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.67□□□□□ -1.98
USF1P22415 MTCYBP27-201ENST00000555160 670 ntBASIC2.67□□□□□ -1.98
USF1P22415 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.67□□□□□ -1.98
USF1P22415 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.67□□□□□ -1.98
USF1P22415 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.67□□□□□ -1.98
USF1P22415 AP000238.1-201ENST00000608759 426 ntBASIC2.67□□□□□ -1.98
USF1P22415 AP005137.2-201ENST00000609238 400 ntBASIC2.67□□□□□ -1.98
USF1P22415 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
USF1P22415 AC099506.2-201ENST00000623074 221 ntBASIC2.67□□□□□ -1.98
USF1P22415 AC091925.2-201ENST00000625059 256 ntBASIC2.67□□□□□ -1.98
USF1P22415 AL137790.1-201ENST00000634283 177 ntBASIC2.67□□□□□ -1.98
USF1P22415 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
USF1P22415 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
USF1P22415 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.67□□□□□ -1.98
USF1P22415 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.67□□□□□ -1.98
USF1P22415 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
USF1P22415 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
USF1P22415 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
USF1P22415 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.66□□□□□ -1.98
USF1P22415 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
USF1P22415 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
USF1P22415 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC2.66□□□□□ -1.98
USF1P22415 RNU5B-1-201ENST00000363286 116 ntBASIC2.66□□□□□ -1.98
USF1P22415 SNORA7.4-201ENST00000384249 137 ntBASIC2.66□□□□□ -1.98
USF1P22415 SNORA44-201ENST00000384584 132 ntBASIC2.66□□□□□ -1.98
USF1P22415 AC092638.1-201ENST00000411966 1275 ntBASIC2.66□□□□□ -1.98
USF1P22415 RPL32P35-201ENST00000415214 394 ntBASIC2.66□□□□□ -1.98
USF1P22415 MRPL50P2-201ENST00000416821 482 ntBASIC2.66□□□□□ -1.98
USF1P22415 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.66□□□□□ -1.98
USF1P22415 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.66□□□□□ -1.98
USF1P22415 Z93242.1-201ENST00000427102 353 ntBASIC2.66□□□□□ -1.98
USF1P22415 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC2.66□□□□□ -1.98
USF1P22415 MTCYBP32-201ENST00000427945 1084 ntBASIC2.66□□□□□ -1.98
USF1P22415 AC012497.1-201ENST00000429392 575 ntBASIC2.66□□□□□ -1.98
USF1P22415 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
USF1P22415 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC2.66□□□□□ -1.98
USF1P22415 RPL36AP33-201ENST00000450395 310 ntBASIC2.66□□□□□ -1.98
USF1P22415 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.66□□□□□ -1.98
USF1P22415 AC068724.1-201ENST00000487100 792 ntBASIC2.66□□□□□ -1.98
USF1P22415 KLRA1P-201ENST00000503499 986 ntBASIC2.66□□□□□ -1.98
USF1P22415 AC006390.1-201ENST00000508068 283 ntBASIC2.66□□□□□ -1.98
USF1P22415 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
USF1P22415 RPL23AP94-201ENST00000512518 302 ntBASIC2.66□□□□□ -1.98
USF1P22415 MTND2P31-201ENST00000512602 616 ntBASIC2.66□□□□□ -1.98
USF1P22415 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.66□□□□□ -1.98
USF1P22415 RNA5SP217-201ENST00000515959 91 ntBASIC2.66□□□□□ -1.98
USF1P22415 SNORD59.2-201ENST00000516873 68 ntBASIC2.66□□□□□ -1.98
USF1P22415 RNU6-711P-201ENST00000517255 106 ntBASIC2.66□□□□□ -1.98
USF1P22415 AC245166.1-201ENST00000521012 253 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms