Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A1P12109 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A1P12109 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 PANCR-202ENST00000513690 448 ntTSL 2 BASIC5.02□□□□□ -1.61
COL6A1P12109 AP005639.2-201ENST00000527592 928 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A1P12109 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.02□□□□□ -1.61
COL6A1P12109 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.02□□□□□ -1.61
COL6A1P12109 AC087477.6-201ENST00000559595 843 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A1P12109 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC5.02□□□□□ -1.61
COL6A1P12109 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A1P12109 AL391646.1-201ENST00000603860 190 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 MIR98-201ENST00000606724 119 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 AC093788.1-201ENST00000609356 927 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC5.02□□□□□ -1.61
COL6A1P12109 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A1P12109 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A1P12109 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 C2orf27A-204ENST00000623058 969 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 AC090574.1-201ENST00000623186 233 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 AC112484.5-201ENST00000624189 228 ntBASIC5.02□□□□□ -1.61
COL6A1P12109 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.02□□□□□ -1.61
COL6A1P12109 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A1P12109 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL6A1P12109 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL6A1P12109 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.01□□□□□ -1.61
COL6A1P12109 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A1P12109 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A1P12109 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A1P12109 AC097504.1-201ENST00000515103 2415 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.01□□□□□ -1.61
COL6A1P12109 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A1P12109 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL6A1P12109 RPA3-203ENST00000401447 414 ntTSL 3 BASIC5.01□□□□□ -1.61
COL6A1P12109 AL139095.3-201ENST00000419672 1203 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 AF228730.4-201ENST00000421457 183 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 AL589872.1-201ENST00000426602 288 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL6A1P12109 AC007677.1-201ENST00000445757 515 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 RPL23AP43-201ENST00000446445 471 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC5.01□□□□□ -1.61
COL6A1P12109 HMGB3P30-201ENST00000457863 606 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 RPS15AP17-201ENST00000470598 390 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
COL6A1P12109 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC5.01□□□□□ -1.61
COL6A1P12109 RNU6-1153P-201ENST00000516760 105 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC5.01□□□□□ -1.61
COL6A1P12109 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.01□□□□□ -1.61
COL6A1P12109 AC005868.1-201ENST00000536421 331 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 AL389895.1-201ENST00000554127 252 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.01□□□□□ -1.61
COL6A1P12109 MIR4286-201ENST00000580651 93 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 AC007621.1-201ENST00000604544 437 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 AL035413.2-201ENST00000604801 525 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC5.01□□□□□ -1.61
COL6A1P12109 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC5.01□□□□□ -1.61
COL6A1P12109 uc_338.13-201ENST00000618243 179 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.01□□□□□ -1.61
COL6A1P12109 AL732618.1-201ENST00000623251 301 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC5.01□□□□□ -1.61
COL6A1P12109 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL6A1P12109 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A1P12109 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A1P12109 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC5.01□□□□□ -1.61
COL6A1P12109 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL6A1P12109 AC011755.1-201ENST00000623763 2049 ntBASIC5.01□□□□□ -1.61
COL6A1P12109 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
COL6A1P12109 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL6A1P12109 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A1P12109 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5□□□□□ -1.61
COL6A1P12109 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5□□□□□ -1.61
COL6A1P12109 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL6A1P12109 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5□□□□□ -1.61
COL6A1P12109 AP002907.1-201ENST00000606361 1430 ntBASIC5□□□□□ -1.61
COL6A1P12109 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL6A1P12109 Y_RNA.86-201ENST00000363020 111 ntBASIC5□□□□□ -1.61
COL6A1P12109 RNA5SP167-201ENST00000365461 116 ntBASIC5□□□□□ -1.61
COL6A1P12109 RNU6-692P-201ENST00000384496 107 ntBASIC5□□□□□ -1.61
COL6A1P12109 ENSAP1-201ENST00000392855 326 ntBASIC5□□□□□ -1.61
COL6A1P12109 MRPL42P2-201ENST00000403169 426 ntBASIC5□□□□□ -1.61
COL6A1P12109 MIR1302-11-201ENST00000408051 138 ntBASIC5□□□□□ -1.61
COL6A1P12109 MIR1302-9-201ENST00000408365 138 ntBASIC5□□□□□ -1.61
COL6A1P12109 MIR1302-10-201ENST00000408734 138 ntBASIC5□□□□□ -1.61
COL6A1P12109 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC5□□□□□ -1.61
COL6A1P12109 AC104333.2-201ENST00000422630 192 ntBASIC5□□□□□ -1.61
COL6A1P12109 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5□□□□□ -1.61
COL6A1P12109 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC5□□□□□ -1.61
COL6A1P12109 ISCUP1-201ENST00000454451 448 ntBASIC5□□□□□ -1.61
COL6A1P12109 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5□□□□□ -1.61
COL6A1P12109 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC5□□□□□ -1.61
COL6A1P12109 HMGN1P13-201ENST00000505795 138 ntBASIC5□□□□□ -1.61
COL6A1P12109 AC034159.1-201ENST00000513885 583 ntBASIC5□□□□□ -1.61
COL6A1P12109 RNU6-445P-201ENST00000516949 107 ntBASIC5□□□□□ -1.61
COL6A1P12109 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC5□□□□□ -1.61
COL6A1P12109 HIF1AP1-201ENST00000553642 175 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms