Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GOT2P5-201ENST00000433995 546 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.89□□□□□ -1.63
HMGB1P09429 CBWD4P-201ENST00000445695 655 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 NUTF2P3-201ENST00000448540 384 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.89□□□□□ -1.63
HMGB1P09429 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.89□□□□□ -1.63
HMGB1P09429 AC091564.1-201ENST00000464563 479 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 LARP1BP2-201ENST00000486594 519 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 RN7SL271P-201ENST00000487601 295 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 AF213884.1-201ENST00000488102 463 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC4.89□□□□□ -1.63
HMGB1P09429 AC093824.1-201ENST00000508796 343 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC4.89□□□□□ -1.63
HMGB1P09429 RN7SKP287-201ENST00000516546 266 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HMGB1P09429 AP000907.2-201ENST00000530827 353 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 DNAJC8P1-201ENST00000554535 372 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.89□□□□□ -1.63
HMGB1P09429 AC007599.1-201ENST00000568688 1174 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 ISCA1P3-201ENST00000577104 373 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 IPO5P1-202ENST00000600039 287 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 AC007038.2-201ENST00000608095 740 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 AC004908.2-201ENST00000609090 574 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 MIR4727-201ENST00000622232 55 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 AC073308.1-201ENST00000623696 305 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 AP003122.6-201ENST00000623831 495 ntBASIC4.89□□□□□ -1.63
HMGB1P09429 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
HMGB1P09429 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
HMGB1P09429 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
HMGB1P09429 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HMGB1P09429 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HMGB1P09429 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.88□□□□□ -1.63
HMGB1P09429 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HMGB1P09429 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HMGB1P09429 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HMGB1P09429 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.88□□□□□ -1.63
HMGB1P09429 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.88□□□□□ -1.63
HMGB1P09429 OR11H4-201ENST00000315409 1082 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 RNU6-660P-201ENST00000364566 109 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HMGB1P09429 AC092647.1-201ENST00000420654 287 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 RPL23AP69-201ENST00000431134 458 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.88□□□□□ -1.63
HMGB1P09429 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC4.88□□□□□ -1.63
HMGB1P09429 AC006011.1-201ENST00000442758 349 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.88□□□□□ -1.63
HMGB1P09429 AL451050.1-201ENST00000450126 415 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AL135752.1-201ENST00000479477 471 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 LINC00888-204ENST00000487386 421 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC4.88□□□□□ -1.63
HMGB1P09429 AC025554.1-201ENST00000505641 188 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AC118282.1-201ENST00000506408 765 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HMGB1P09429 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.88□□□□□ -1.63
HMGB1P09429 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HMGB1P09429 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.88□□□□□ -1.63
HMGB1P09429 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.88□□□□□ -1.63
HMGB1P09429 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HMGB1P09429 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.88□□□□□ -1.63
HMGB1P09429 AC006116.5-201ENST00000591936 559 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 VN1R90P-201ENST00000595717 726 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AC068790.3-201ENST00000602988 553 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AC104662.1-201ENST00000604448 511 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AC018714.1-201ENST00000605028 208 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 BCRP9-201ENST00000605312 388 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AL450489.1-201ENST00000612071 468 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AC103858.2-201ENST00000621471 543 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.88□□□□□ -1.63
HMGB1P09429 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HMGB1P09429 AC116667.1-201ENST00000604855 2072 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.88□□□□□ -1.63
HMGB1P09429 UBE3AP2-201ENST00000429033 2259 ntBASIC4.88□□□□□ -1.63
HMGB1P09429 AL049641.1-201ENST00000441055 1948 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HMGB1P09429 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HMGB1P09429 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
HMGB1P09429 SNORA60-201ENST00000362396 134 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 RNU6-1027P-201ENST00000383998 107 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.87□□□□□ -1.63
HMGB1P09429 AC016769.2-201ENST00000414815 475 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 VPS26BP1-201ENST00000417155 755 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AC069157.1-201ENST00000421749 137 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AC091390.3-201ENST00000426478 338 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.87□□□□□ -1.63
HMGB1P09429 GSTA7P-201ENST00000438425 448 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AL008629.1-201ENST00000438615 184 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 PIGFP3-201ENST00000441918 722 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.87□□□□□ -1.63
HMGB1P09429 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC4.87□□□□□ -1.63
HMGB1P09429 MTCYBP3-201ENST00000445588 1137 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 DDX3P2-201ENST00000446138 111 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC4.87□□□□□ -1.63
HMGB1P09429 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC4.87□□□□□ -1.63
HMGB1P09429 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC4.87□□□□□ -1.63
HMGB1P09429 AC008481.1-201ENST00000463278 396 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 RPL29P14-201ENST00000495837 428 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 RPS27AP13-201ENST00000498403 237 ntBASIC4.87□□□□□ -1.63
HMGB1P09429 OR5BM1P-201ENST00000512021 366 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms