Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC1.94□□□□□ -2.1
CXCL1P09341 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.94□□□□□ -2.1
CXCL1P09341 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.94□□□□□ -2.1
CXCL1P09341 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC1.94□□□□□ -2.1
CXCL1P09341 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC1.94□□□□□ -2.1
CXCL1P09341 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC1.94□□□□□ -2.1
CXCL1P09341 AC006329.2-201ENST00000611491 394 ntBASIC1.94□□□□□ -2.1
CXCL1P09341 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC1.94□□□□□ -2.1
CXCL1P09341 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC1.94□□□□□ -2.1
CXCL1P09341 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
CXCL1P09341 ANKRD36BP1-201ENST00000358576 1779 ntBASIC1.94□□□□□ -2.1
CXCL1P09341 AC087359.1-201ENST00000508335 1740 ntBASIC1.94□□□□□ -2.1
CXCL1P09341 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CXCL1P09341 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CXCL1P09341 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CXCL1P09341 AC104446.1-201ENST00000613728 1321 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC1.93□□□□□ -2.1
CXCL1P09341 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CXCL1P09341 MIR21-201ENST00000362134 72 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 SNORA38.1-201ENST00000364172 131 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 MDM4-202ENST00000367180 547 ntTSL 3 BASIC1.93□□□□□ -2.1
CXCL1P09341 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
CXCL1P09341 RNU6-821P-201ENST00000390995 107 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 AL138827.1-201ENST00000402666 306 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 AL138885.1-201ENST00000405921 675 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 HMGB3P2-201ENST00000411913 584 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC1.93□□□□□ -2.1
CXCL1P09341 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC1.93□□□□□ -2.1
CXCL1P09341 USP9YP20-201ENST00000419224 558 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CXCL1P09341 RPL7P37-201ENST00000425095 738 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC1.93□□□□□ -2.1
CXCL1P09341 AL139132.1-201ENST00000431587 344 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.93□□□□□ -2.1
CXCL1P09341 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC1.93□□□□□ -2.1
CXCL1P09341 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC1.93□□□□□ -2.1
CXCL1P09341 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC1.93□□□□□ -2.1
CXCL1P09341 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.93□□□□□ -2.1
CXCL1P09341 AL513328.1-201ENST00000446460 224 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC1.93□□□□□ -2.1
CXCL1P09341 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CXCL1P09341 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC1.93□□□□□ -2.1
CXCL1P09341 RNA5SP282-201ENST00000516355 108 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC1.93□□□□□ -2.1
CXCL1P09341 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC1.93□□□□□ -2.1
CXCL1P09341 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.93□□□□□ -2.1
CXCL1P09341 AC106900.2-201ENST00000604994 317 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 YPEL5P2-201ENST00000605553 359 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 AL513477.2-201ENST00000607858 568 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.93□□□□□ -2.1
CXCL1P09341 CRYM-AS1-204ENST00000637983 556 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
CXCL1P09341 AC119674.1-220ENST00000641502 1048 ntBASIC1.93□□□□□ -2.1
CXCL1P09341 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
CXCL1P09341 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
CXCL1P09341 AL513185.3-201ENST00000433335 1300 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC1.92□□□□□ -2.1
CXCL1P09341 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.92□□□□□ -2.1
CXCL1P09341 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
CXCL1P09341 MIRLET7G-201ENST00000362280 84 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 RNU6-819P-201ENST00000364116 107 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.92□□□□□ -2.1
CXCL1P09341 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CXCL1P09341 SNORA9-201ENST00000384215 133 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 MIR9-1-201ENST00000385198 89 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 TAS2R15P-201ENST00000390674 928 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CXCL1P09341 FABP12P1-201ENST00000401911 322 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CXCL1P09341 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC1.92□□□□□ -2.1
CXCL1P09341 AL356320.2-201ENST00000417263 507 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 Z75741.2-201ENST00000417272 1167 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 MORF4L1P6-201ENST00000418771 268 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 AC069157.1-201ENST00000421749 137 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 TMEM167AP1-201ENST00000423409 219 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CXCL1P09341 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.92□□□□□ -2.1
CXCL1P09341 NAP1L1P3-201ENST00000462291 880 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC1.92□□□□□ -2.1
CXCL1P09341 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC1.92□□□□□ -2.1
CXCL1P09341 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC1.92□□□□□ -2.1
CXCL1P09341 AC092593.2-201ENST00000513866 913 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 RNU4ATAC17P-201ENST00000517272 120 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CXCL1P09341 AC104997.1-201ENST00000519761 717 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC1.92□□□□□ -2.1
CXCL1P09341 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC1.92□□□□□ -2.1
CXCL1P09341 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC1.92□□□□□ -2.1
CXCL1P09341 AL161756.2-201ENST00000604597 246 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC1.92□□□□□ -2.1
CXCL1P09341 AC068880.5-201ENST00000624331 290 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 AC068620.4-201ENST00000636730 1182 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 MTND2P41-201ENST00000637599 773 ntBASIC1.92□□□□□ -2.1
CXCL1P09341 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.92□□□□□ -2.1
CXCL1P09341 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
CXCL1P09341 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.92□□□□□ -2.1
CXCL1P09341 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
CXCL1P09341 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
CXCL1P09341 POMP-202ENST00000460403 1428 ntTSL 3 BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms