Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 TRAV31-201ENST00000502780 342 ntBASIC3.25□□□□□ -1.89
NPHP4O75161 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
NPHP4O75161 AC068339.2-201ENST00000534395 618 ntBASIC3.25□□□□□ -1.89
NPHP4O75161 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.25□□□□□ -1.89
NPHP4O75161 MTND4LP24-201ENST00000572277 291 ntBASIC3.25□□□□□ -1.89
NPHP4O75161 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC3.25□□□□□ -1.89
NPHP4O75161 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC3.25□□□□□ -1.89
NPHP4O75161 AL391813.2-201ENST00000609113 322 ntBASIC3.25□□□□□ -1.89
NPHP4O75161 SNORA50A-202ENST00000629536 136 ntBASIC3.25□□□□□ -1.89
NPHP4O75161 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
NPHP4O75161 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.24□□□□□ -1.89
NPHP4O75161 U3.15-201ENST00000365398 212 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.24□□□□□ -1.89
NPHP4O75161 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.24□□□□□ -1.89
NPHP4O75161 AC108667.1-201ENST00000428618 249 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 RPL34P26-201ENST00000445636 354 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 OR5H4P-201ENST00000510851 923 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 HMGB1P46-201ENST00000520062 610 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 HIGD1AP10-201ENST00000527837 282 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.24□□□□□ -1.89
NPHP4O75161 AL049870.4-201ENST00000555741 486 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.24□□□□□ -1.89
NPHP4O75161 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.24□□□□□ -1.89
NPHP4O75161 snoU13.31-201ENST00000607291 104 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 U6.98-201ENST00000637157 84 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 ZNF355P-201ENST00000427301 3216 ntBASIC3.24□□□□□ -1.89
NPHP4O75161 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.23□□□□□ -1.89
NPHP4O75161 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
NPHP4O75161 WWP1P1-201ENST00000466609 2769 ntBASIC3.23□□□□□ -1.89
NPHP4O75161 Y_RNA.796-201ENST00000364268 102 ntBASIC3.23□□□□□ -1.89
NPHP4O75161 Y_RNA.799-201ENST00000364992 102 ntBASIC3.23□□□□□ -1.89
NPHP4O75161 AC092832.1-201ENST00000422934 400 ntBASIC3.23□□□□□ -1.89
NPHP4O75161 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.23□□□□□ -1.89
NPHP4O75161 RPL23AP74-201ENST00000437246 471 ntBASIC3.23□□□□□ -1.89
NPHP4O75161 MTCYBP31-201ENST00000438855 1122 ntBASIC3.23□□□□□ -1.89
NPHP4O75161 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NPHP4O75161 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3.23□□□□□ -1.89
NPHP4O75161 FAM92A1P2-202ENST00000504766 877 ntBASIC3.23□□□□□ -1.89
NPHP4O75161 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
NPHP4O75161 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.23□□□□□ -1.89
NPHP4O75161 RNA5SP309-201ENST00000516670 106 ntBASIC3.23□□□□□ -1.89
NPHP4O75161 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.23□□□□□ -1.89
NPHP4O75161 HAUS1P3-201ENST00000523909 662 ntBASIC3.23□□□□□ -1.89
NPHP4O75161 PCNAP1-202ENST00000595299 752 ntBASIC3.23□□□□□ -1.89
NPHP4O75161 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.23□□□□□ -1.89
NPHP4O75161 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.23□□□□□ -1.89
NPHP4O75161 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.23□□□□□ -1.89
NPHP4O75161 AC025125.1-201ENST00000624743 1922 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
NPHP4O75161 SNORA41-201ENST00000384675 132 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 SNORA17.3-201ENST00000391159 129 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 AL591416.1-201ENST00000404015 867 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.22□□□□□ -1.89
NPHP4O75161 RPS24P8-201ENST00000431490 402 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 MTND2P21-201ENST00000436242 1042 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 GSTA11P-201ENST00000452866 669 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 AC087385.1-201ENST00000475062 312 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.22□□□□□ -1.89
NPHP4O75161 AC012170.1-201ENST00000495139 359 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.22□□□□□ -1.89
NPHP4O75161 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP4O75161 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.22□□□□□ -1.89
NPHP4O75161 AC010198.2-201ENST00000550612 259 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP4O75161 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.22□□□□□ -1.89
NPHP4O75161 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.22□□□□□ -1.89
NPHP4O75161 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.22□□□□□ -1.89
NPHP4O75161 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
NPHP4O75161 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
NPHP4O75161 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
NPHP4O75161 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
NPHP4O75161 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.21□□□□□ -1.9
NPHP4O75161 SNORA27.3-201ENST00000364937 134 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.21□□□□□ -1.9
NPHP4O75161 MIR221-201ENST00000385135 110 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 SNORD88.1-201ENST00000408684 91 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 RNU2-6P-201ENST00000411404 190 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 AC004022.2-201ENST00000413824 193 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 SPA17P1-201ENST00000416656 452 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.21□□□□□ -1.9
NPHP4O75161 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC3.21□□□□□ -1.9
NPHP4O75161 AC091179.1-201ENST00000461606 579 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 AC022790.1-201ENST00000522872 204 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.21□□□□□ -1.9
NPHP4O75161 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.21□□□□□ -1.9
NPHP4O75161 AC113194.1-201ENST00000606037 500 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 AC093673.2-201ENST00000609674 331 ntBASIC3.21□□□□□ -1.9
NPHP4O75161 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
NPHP4O75161 RNA5SP391-201ENST00000363456 119 ntBASIC3.2□□□□□ -1.9
NPHP4O75161 RNU6-40P-201ENST00000384254 107 ntBASIC3.2□□□□□ -1.9
NPHP4O75161 Z86062.1-201ENST00000406773 777 ntBASIC3.2□□□□□ -1.9
NPHP4O75161 ZNF92P1Y-201ENST00000415010 1191 ntBASIC3.2□□□□□ -1.9
NPHP4O75161 RFESDP1-201ENST00000422350 461 ntBASIC3.2□□□□□ -1.9
NPHP4O75161 RPS26P30-201ENST00000443431 335 ntBASIC3.2□□□□□ -1.9
NPHP4O75161 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.2□□□□□ -1.9
NPHP4O75161 AC025459.1-201ENST00000504072 156 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms