Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC125603.4-201ENST00000621942 2699 ntBASIC9.54□□□□□ -0.88
MSH5O43196 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC9.54□□□□□ -0.88
MSH5O43196 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
MSH5O43196 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC9.53□□□□□ -0.88
MSH5O43196 MFSD8-227ENST00000641393 4069 ntBASIC9.53□□□□□ -0.88
MSH5O43196 ITPK1-AS1-201ENST00000553639 4701 ntBASIC9.53□□□□□ -0.88
MSH5O43196 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
MSH5O43196 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
MSH5O43196 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
MSH5O43196 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
MSH5O43196 USP16-204ENST00000399976 2963 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
MSH5O43196 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC9.53□□□□□ -0.88
MSH5O43196 RNY3P2-201ENST00000362918 102 ntBASIC9.53□□□□□ -0.88
MSH5O43196 AC092634.1-201ENST00000366505 199 ntBASIC9.53□□□□□ -0.88
MSH5O43196 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC9.53□□□□□ -0.88
MSH5O43196 AL034379.1-201ENST00000423216 253 ntBASIC9.53□□□□□ -0.88
MSH5O43196 PPIAP13-201ENST00000434706 478 ntBASIC9.53□□□□□ -0.88
MSH5O43196 RPL26P9-201ENST00000457466 433 ntBASIC9.53□□□□□ -0.88
MSH5O43196 AC103783.1-201ENST00000520506 373 ntBASIC9.53□□□□□ -0.88
MSH5O43196 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC9.53□□□□□ -0.88
MSH5O43196 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC9.53□□□□□ -0.88
MSH5O43196 AC211433.3-201ENST00000623770 375 ntBASIC9.53□□□□□ -0.88
MSH5O43196 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
MSH5O43196 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
MSH5O43196 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC9.53□□□□□ -0.88
MSH5O43196 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC9.53□□□□□ -0.88
MSH5O43196 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
MSH5O43196 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
MSH5O43196 DLEU2L-201ENST00000371086 3555 ntBASIC9.53□□□□□ -0.88
MSH5O43196 SNX16-202ENST00000353788 3032 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
MSH5O43196 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.88
MSH5O43196 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
MSH5O43196 NAMPTP1-201ENST00000440465 2514 ntBASIC9.52□□□□□ -0.88
MSH5O43196 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.89
MSH5O43196 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC9.52□□□□□ -0.89
MSH5O43196 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
MSH5O43196 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
MSH5O43196 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
MSH5O43196 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC9.52□□□□□ -0.89
MSH5O43196 TEX14-201ENST00000240361 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
MSH5O43196 RNU6-219P-201ENST00000364728 107 ntBASIC9.52□□□□□ -0.89
MSH5O43196 RND3-202ENST00000375734 2777 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
MSH5O43196 SNORD38C-201ENST00000384381 69 ntBASIC9.52□□□□□ -0.89
MSH5O43196 MIR10A-201ENST00000385043 110 ntBASIC9.52□□□□□ -0.89
MSH5O43196 MIR301A-201ENST00000385261 86 ntBASIC9.52□□□□□ -0.89
MSH5O43196 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC9.52□□□□□ -0.89
MSH5O43196 AC128677.1-201ENST00000436016 442 ntBASIC9.52□□□□□ -0.89
MSH5O43196 AL161626.1-201ENST00000441480 490 ntBASIC9.52□□□□□ -0.89
MSH5O43196 AL845321.1-201ENST00000444603 348 ntBASIC9.52□□□□□ -0.89
MSH5O43196 RN7SL372P-201ENST00000461982 298 ntBASIC9.52□□□□□ -0.89
MSH5O43196 FTH1P23-201ENST00000492727 550 ntBASIC9.52□□□□□ -0.89
MSH5O43196 RPL30P5-201ENST00000494923 336 ntBASIC9.52□□□□□ -0.89
MSH5O43196 RNA5SP473-201ENST00000516402 125 ntBASIC9.52□□□□□ -0.89
MSH5O43196 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC9.52□□□□□ -0.89
MSH5O43196 AC008489.1-201ENST00000524271 483 ntBASIC9.52□□□□□ -0.89
MSH5O43196 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
MSH5O43196 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
MSH5O43196 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC9.52□□□□□ -0.89
MSH5O43196 MIR5682-201ENST00000584864 76 ntBASIC9.52□□□□□ -0.89
MSH5O43196 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC9.52□□□□□ -0.89
MSH5O43196 CYCSP1-201ENST00000604815 315 ntBASIC9.52□□□□□ -0.89
MSH5O43196 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC9.52□□□□□ -0.89
MSH5O43196 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
MSH5O43196 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
MSH5O43196 IL31RA-207ENST00000490985 2414 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
MSH5O43196 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
MSH5O43196 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
MSH5O43196 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
MSH5O43196 AC091564.4-201ENST00000533934 2194 ntBASIC9.51□□□□□ -0.89
MSH5O43196 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
MSH5O43196 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
MSH5O43196 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC9.51□□□□□ -0.89
MSH5O43196 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
MSH5O43196 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
MSH5O43196 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
MSH5O43196 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC9.51□□□□□ -0.89
MSH5O43196 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
MSH5O43196 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC9.51□□□□□ -0.89
MSH5O43196 AC135178.2-201ENST00000582471 3087 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
MSH5O43196 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
MSH5O43196 RNY4P6-201ENST00000363667 96 ntBASIC9.51□□□□□ -0.89
MSH5O43196 RNU1-122P-201ENST00000365538 156 ntBASIC9.51□□□□□ -0.89
MSH5O43196 Y_RNA.368-201ENST00000365547 113 ntBASIC9.51□□□□□ -0.89
MSH5O43196 AL512633.1-201ENST00000399931 655 ntBASIC9.51□□□□□ -0.89
MSH5O43196 RNU6-855P-201ENST00000410395 104 ntBASIC9.51□□□□□ -0.89
MSH5O43196 AC007365.2-201ENST00000428806 458 ntBASIC9.51□□□□□ -0.89
MSH5O43196 AC098818.1-201ENST00000478593 252 ntBASIC9.51□□□□□ -0.89
MSH5O43196 RNU6-143P-201ENST00000516942 93 ntBASIC9.51□□□□□ -0.89
MSH5O43196 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC9.51□□□□□ -0.89
MSH5O43196 AC036176.3-201ENST00000602456 418 ntBASIC9.51□□□□□ -0.89
MSH5O43196 AC211486.4-201ENST00000621495 113 ntBASIC9.51□□□□□ -0.89
MSH5O43196 TEX41-293ENST00000630451 690 ntTSL 5 BASIC9.51□□□□□ -0.89
MSH5O43196 AL356585.10-201ENST00000641883 123 ntBASIC9.51□□□□□ -0.89
MSH5O43196 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
MSH5O43196 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
MSH5O43196 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
MSH5O43196 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC9.51□□□□□ -0.89
MSH5O43196 MTHFD1P1-201ENST00000413059 2764 ntBASIC9.51□□□□□ -0.89
MSH5O43196 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC9.51□□□□□ -0.89
MSH5O43196 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 228.4 ms